1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGATCATAGACTTGATCCTCACATTGAAGAGCAGTTTGGCAGTGGTAGATTGTTGGCTAGCATCTCTTCCCGACCAGGTCAATGTGGCAGAGCTGATGGgtgagttagaagacacaatattttttttgcaagcatactctgtctgttggtttacctgaaatcgttcccataaaaattccaattgcag
species | Vitis vinifera |
transcript | Vv05s0062g00120.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGGCTAGCATCTCTTCCCGACCAGGTCAATGCGGCAGAACTGATGG ATACATCTTGGAAAGAAAG-AACTGGAGTTCTATATGAAGAAGATTTCAAAEST: gi|349827019|gb|FQ419110.1|FQ419110
genomic: TTGTTGGCTAGCATCTCTTCCCGACCAGGTCAATGTGGCAGAGCTGATGGgtgagttaga ... ccaattgcagATACATCTTGGAAGGAAAGGAACTGGAGTTCTATATGAAGAAGATT-CAAA
EST: TTGTTGGCTAGCATCTCTTCCCGACCAGGTCAATGTGGCAGAGCTGATGG ATACATCTTGGAAGGAAAGGAACTGGAGTTCTATATGAAGAAGATTCAAAG
genomic: TTGTTGGCTAGCATCTCTTCCCGACCAGGTCAATGTGGCAGAGCTGATGGgtgagttaga ... ccaattgcagATACATCTTGGAAGGAAAGGAACTGGAGTTCTATATGAAGAAGATTCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATCATAGACTTGATCCTCACATTGAAGAGCAGTTTGGCAGTGGTAGATTGTTGGCTAGCATCTCTTCCCGACCAGGTCAATGTGGCAGAGCTGATGGgtgagttagaagacacaatattttttttgcaagcatactctgtctgttggtttacctgaaatcgttcccataaaaattccaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT