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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCACCTATTGATCCATTTACTCGAGAAACTTGCAAGCCATCAGCATCGCAAGGGGTTCCTCTCGGAGGGATGGGgtatgtagtgtgtgaactatgaaaaactgtatttgtttctctactgtaatattttcacacatctgaaggggttgaatcttttatttcacag

Basic information

species Vitis vinifera
transcript Vv05s0051g00910.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G33990.1 (Glycine max), 5'ss of exon 4
AAAGCACCTATTGATCCATTTACTCGAGAAACTTGCAAGCCATCAGCATCGCAAGGGGTTCCTCTCGGAGGGATGGGgtatg-------tagtgtgtgaactatgaaaaactgt----atttgtttctctactgtaatatt-ttcac--acatctgaaggggttgaatctttt-----atttcacag--------------------------------------------------------------------
||||||||||||||||| || |||||||||| |||||||||||| ||||| ||||| || || |||||||||||||||||||       |  | ||  | |||  ||  | | |    | ||| |  ||   | ||  ||| || ||  |  | |  |    ||||   ||||     ||||   ||                                                                    
AAAGCACCTATTGATCCTTTCACTCGAGAAAGTTGCAAGCCATCTGCATCTCAAGGAGTCCCACTCGGAGGGATGGGgtatgatttgattcatttgaaagctaccaattaatttcctgacttgctaatcctgtataccattctttactaatgtgtttatccattgaccttttttattaattttctagaacaacaaaacctttttcttcttgaattgatttgaacatgactaatgactacatatatacctacacag

upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G33610.1 (Glycine max), 5'ss of exon 5
AAAGCACCTATTGATCCATTTACTCGAGAAACTTGCAAGCCATCAGCATCGCAAGGGGTTCCTCTCGGAGGGATGGGgtatgtagtg-------tgtgaactatgaaa-aactgt---atttgtttctctactgtaatatt-ttcacacatctgaaggggttgaatctttt------atttcacag---------------------------------------------------
||||| ||||||||||| || |||||||||| |||||||||||| ||||| ||||| ||||| || ||||||||||||||||   ||       ||  | |||  ||  || ||    | ||| |  |    | ||  ||| || ||| || ||            |||||      ||||   ||                                                   
AAAGCGCCTATTGATCCTTTCACTCGAGAAAGTTGCAAGCCATCTGCATCTCAAGGAGTTCCACTTGGAGGGATGGGgtatgatttgatccaattgaaagctaccaattaattgcctgacttgctaattctgtataccattctttacaaatgtgtttatccatggccttttgtagtaattttctagaacaagtttcttcttgtattgatttgaacatgactatatatacctacacag