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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagattttatcatgattgtatgtgggaaccatatgcatgcttctgatcatgacttaagaagcaataaccctctccatatttacttattacag

Basic information

species Vitis vinifera
transcript Vv05s0049g01220.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 4
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagattttatcatgattgtatgtgggaaccatatgcatgcttctgatcatgacttaagaagcaataaccctctccatatttacttattacag
| ||| | || ||||| |||||||| ||||||||||| || |||||||||||||| || ||||| || ||  | ||||| | ||| || || || || |||| ||| ||        |  |   |  || |  |   | | |    |||  |||  |||   | |  | |  || | |     || || |          
TAATGAGGAAAGATACATTGACTGAGGATGAGGCCAGGTTCTATGTTGGTGAAACAGTTCTTGCAATAGAAGCAATCCACAGGCACAACTACATCCACAGgtgtgtatat-------ttgtagcttcatatcagcttcttcttaccgctgttgag-atgttctgatgaact-tagcacatg--attttcag---------

upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G32480.1 (Glycine max), 5'ss of exon 4
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagatt----ttatcatgattgtatgtgggaaccatat-gcatgcttctgatcatgactt-----------------aagaagcaataaccctctccatatt-tacttattacag
| |||||||||||||   |||| |||||||||||||| || |||||||| || || ||| | ||||| ||||| || ||||| |||||||||||||||||||  |   ||| ||    |  ||||| |      ||  || | |||   ||   ||| ||  ||   |                 || |||  ||||   |||   | |  ||   ||| |||
TCATGCGAAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaagcttcaaatagtcatgttacaccatgaaaatcttattatattaatcttatggtggtctttttttcttgcacatcaaaaaaggtataatattcttattttgatatgcattccag

upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 4
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagatt----ttatcatgattgtatgtgggaaccatatgcatgcttc----tgatcatgactt---------------aagaagcaataaccctctccatatt-tacttattacag
| ||||| |||||||   |||| ||| |||||||||| || |||||||| || || ||||| ||||| ||||| || ||||| |||||||||||||||||||  |   ||| |     |  ||||| |      ||  || | |||       |     || || ||  ||               || |||  ||||   |||   | |  ||   ||| |||
TCATGCGGAAGGATATACTGACAGAAAATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaagctgcaaatagtcatgttacaccatgaaaatcttatattaatcttatggtggtcttgttttcttgcacataaaaaaaaaaagatataatattctaattttgatatgcattccag

upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G00830.1 (Glycine max), 5'ss of exon 4
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagatttt----atcatgattgtatg-tgggaaccatatgcatgcttctg-atcatgacttaagaa--------gcaataaccctctccatatttactta-ttacag--------------------------
||||||| |||||||   | || |||||||||||||| || |||||||| || || ||||| || || ||||| || ||||| |||||||||||||||||||  |   ||   | |    |  |   |   ||| ||| ||   |    || ||| |    ||||  | ||  |        ||  |   | |||  ||   |||||| || ||                           
TGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGgtaagctcaaagctgtaaaaaataacgtcaaatgatggtaaattttgctatacttttatgacatggatcaatgatacttattgcggtcttcttctggatcaatacttaatttcaataatctgatttttaaatgcattccag

upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G00580.2 (Glycine max), 5'ss of exon 5
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagattttatcatgattgtat------gtgggaaccatatgcatgcttctg-atcatgacttaagaa--gcaataaccctctccatatttacttattacag---------------------------------
||||||| |||||||   | || |||||||||||||| || |||||||| || || ||||| || || ||||| || ||||| ||||||||||| || ||||  |   ||   | ||  |  ||    |       ||| ||   |  | |||||| |    || |  | ||  |     ||  |  ||| | | |  |   || |                                    
TGATGCGGAAGGATATACTAACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATCCACAGgtaagctcaaagctgtaaaaaaataacgtcaaatgatggtaaattttggtatgcttttatgacacggatcaatgatacttatggcggtcttcgtctggatcaataaatatttttaataatctgatttttaaatgcattccag

upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgttt-gtgtaagattttatcatgattgtatgtgggaaccatatgcatgcttctgatc--atgacttaagaagcaataaccctctccatatttacttattacag
| ||| | || || ||  | |||||||||||||| |||||||||||||| ||||| ||| | |||||||||||||| |||||||| |||||||| || |||| | ||| |  | |  |  ||    |||  |  | | | ||| |||  ||||  |    ||   | |  | | ||   | ||||||     | || ||||||
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaagcaatcaactatctgagtaaatttgtagcgtat-catttttcttttttggtgttctgaccatccatttacttctcca-----atttgttacag