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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTAAGAGATCCAGGAAATTCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtattagattccaaatattttctaataaccaagtggtttccccttttactttgttttccccttttgcttccctcttcatgttgttctcaactcggt...

Basic information

species Vitis vinifera
transcript Vv05s0049g01000.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023110|gb|FQ432493.1|FQ432493
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|30251462|gb|CB969195.1|CB969195
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGGACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|351019104|gb|FQ429264.1|FQ429264
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|351043109|gb|FQ451282.1|FQ451282
EST:     TCCAGCTTGAAGATAGGCCCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|351026930|gb|FQ436583.1|FQ436583
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|351026635|gb|FQ436288.1|FQ436288
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|30325386|gb|CD008648.1|CD008648
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|30327540|gb|CD010802.1|CD010802
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|110364060|gb|EC927702.1|EC927702
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|32269991|gb|CD719150.1|CD719150
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|32269556|gb|CD718715.1|CD718715
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|30251536|gb|CB969269.1|CB969269
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTCCCTCCCCGGCA                         GCTGAAGGACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|349822500|gb|FQ412764.1|FQ412764
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|30303048|gb|CB979842.1|CB979842
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCG                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG
EST: gi|32247601|gb|CD713420.1|CD713420
EST:     TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCA                         GCTGAAGAACTTGGAGTTGGACGGGATG
genomic: TCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtatta ... taatgtccagGCTGAAGAACTTGGAGTTGGACGGGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTTAAGAGATCCAGGAAATTCCAGCTTGAAGATAGGCTCTTTTCATTGTCTTCAGTTACCTCACCGGCAgtatgtattagattccaaatattttctaataaccaagtggtttccccttttactttgttttccccttttgcttccctcttcatgttgttctcaactcggt

- - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc