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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTGGTTCTCATCCTTATTTTCCGATTTGTGCCACGTTATGGGAGCACCCATATGATCGTATATGTTGGAATTTGTTCACTCATGGGCTCTCTTACGgtgtgtttatcatctttgaaacttgtgcatattgaaaccattaatctgattctcttaggtttaatgtcgtgttgttggcag

Basic information

species Vitis vinifera
transcript Vv05s0029g00620.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0029g00620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G13800.1 (Arabidopsis thaliana), 5'ss of exon 5
GGTTTTGGTTCTCATCCTTATTTTCCGATTTGTGCCACGTTATGGGAGCACCCATATGATCGTATATGTTGGAATTTGTTCACTCATGGGCTCTCTTACGgtgtgtttatcatctttgaaacttgtgcatattgaaaccattaatctgattctcttaggtttaatgtcgtgttgttggcag--------
|||| |||| ||     | || ||    | || ||| ||||||||||  || |||||||| ||||||||||| ||||| || || |||||||||||||| || ||||| ||||||||     | |  |||     |     ||     | |  |||| ||  | ||||    | |     |        
GGTTGTGGTGCTTGCATTGATCTTTTACTATGAGCCGCGTTATGGGAAGACGCATATGATAGTATATGTTGGGATTTGCTCTCTAATGGGCTCTCTTACAgtatgttt-tcatctttttctttagc-catcccttagtatatatctctacttgcttaagta-agtgtctcagtatctcttgcgtgttag