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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttggaaatataatccaccattgctttgctttttggttaagaaatagcaaatgctacatttttttctctaattttgcatgttattatgaccatatgtgttaacggtttactatctacatgtgtatcttcaatctttcttgcttgcag

Basic information

species Vitis vinifera
transcript Vv05s0029g00240.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G28400.1 (Glycine max), 5'ss of exon 4
AGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttggaaatataatccaccattgctttgctttttggttaagaaatagcaaatgctacatttttttctctaattttgcatgttattatgaccatatgtgttaacggtttactatctacatgtgtatcttcaatctttcttgcttgcag
 |||||||| ||||||| ||||||| |||| ||   |||||||| ||||||||||| |||||||||||| |||||||| ||||| ||  ||||||| |||||   || |  |||    |||     ||  ||         ||||  |   |    ||| ||  ||||  | | |  ||||   | ||  | | |    |  | |||                                              
TGATGGTCTTTATGGGAGGCATCTACATGTATACAGCTGGCCTGGGGGTGAACTGAGACAAACATTGGACCTTGGTGAGTCAGGGCTTCTACCCTTGGAGgtacattgtttaaa----atctggagttatttc---caccagttataatgcattttatggtattttttggttttttttttttgtttttgctgtaattgaagctatta----------------------------------------------

upper sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G11400.1 (Glycine max), 5'ss of exon 4
AGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtg---------------agttttggaaatataatccaccattgctttgctttttg-gttaaga------------aatagcaaatgc-tacatttttttctctaattttgcatgttattatgaccatatgtgttaacggtttactatctacatg-tgtatcttcaatctttcttgcttgcag
 |||||||| ||||||| ||||||| |||| ||   |||||||| ||||||||||| |||||||||||| |||||||| |||||  |  ||||||| |||||                | || ||||  |||  ||||||| |  |  ||  |||  |||||              |||   ||||   |   |  ||| ||  | |||| |    ||   ||  | | ||   |||    |||       |||  | | |   |||  | || |   |||||
TGATGGTCTTTATGGGAGGCATCTACATGTATACAGCTGGCCTGGGGGTGAACTGAGACAAACATTGGACCTTGGTGAGTCAGGGGTTCTACCCTTGGAGgtacattgcttaataaataattctggagttatt-tccaccaattataagcactttatgttaatgtacttgtgatttaatcataaatatgtttgtcctttgctacattttttctctctagcctgtacttgtgaagtaatatgttaaaggtggcataatttgtaagcaacttgtcctaaatgcag

upper sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G36670.1 (Glycine max), 5'ss of exon 4
AGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttggaaatataatccacc-----------attgctttgctttt-tggttaagaaatagcaaatgctacatttttttctctaattttgcatgttattatgaccatat---gtgttaacggtttactatctacatgt-gtatcttcaatctttcttgc----ttgcag----------------------------
 |||||  |||| |||| ||||||  |||| |||  |||||||| ||| ||||||| ||||||| |||| |||||||||||||| || |||||||||||||  |||| |   || ||||||||             | ||| ||  |||| |  ||   |  | |   ||   |    | ||| |      |   || | | ||||||  ||    ||  |  |   || |      | ||| |||  |   | |    ||||    ||||                              
TGATGGATTATACGGGAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACACTGGACCTTGGTGATTCAGGGCTTTTACCCTTAGAGgcaagttgtt--aacataatccagggagatgtttagaatgcattaattttattcttttaactttgtgtatttgaagcctgtttattacccctgtgatttaactatgactgtactaagtacttccccctttcctctcgcttgtagtaattgtgaaccaatttgcaaaattgccatattataactaatgtaccctaaatgcag

upper sequence: Vv05s0029g00240.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G00590.1 (Glycine max), 5'ss of exon 4
AGATGGTCTATATGGGAAGCATCTATATGTGTATTCCTGGCCTGAGGGTGAACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttggaaatataatccaccattgctttgctttttggttaagaaatagcaaatgctacatttttttctctaattttgcatgttattatgaccatatgtgttaacggtttactatctacatgtgtatcttcaatctttcttgcttgcag
 |||||  |||| |||| ||||||  |||| |||  |||||||| ||| ||||||| ||||||| |||| |||||||||||||| ||  ||||||||||||| |||| |   || |||||||           | |   || ||||||    |||  |  |  ||  ||||    || ||||  |   |||   | | | | | ||| | || |  | |  ||                              
TGATGGATTATACGGGAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGgtaagttgtt--aacataatccg----------ggtagatgtttaagat---gcatttattttatcctttt----aactttgtgt---atttgaagcctgtttattacccgtgtgat-ttaac------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26257072|gb|CA808135.1|CA808135
EST:     AACTGAAACAAACATTGGATCTTGGTGATTCAGGACTTTTACCCTTAGAG                         A-AAGATTCCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCC
genomic: AACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttg ... ttgcttgcagATAAGATTCCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCC
EST: gi|110378930|gb|EC944090.1|EC944090
EST:     CAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAG                         ATAAGATTCCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCC
genomic: CAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttg ... ttgcttgcagATAAGATTCCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCC
EST: gi|33401496|gb|CF207123.1|CF207123
EST:     -ACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAG                         ATAAGATTCCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCC
genomic: AACTGAAACAAACATTGGATCTTGGTGATTCAGGACTCTTACCCTTAGAGgtgagttttg ... ttgcttgcagATAAGATTCCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCC