Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaatgttttttcttttaactaccaaagttgtctaatttcactattatctcattattgtctaattgctctgttgtctctgtcttttaaacag

Basic information

species Vitis vinifera
transcript Vv05s0029g00060.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359959|gb|EC922358.1|EC922358
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|77578980|gb|DV218321.1|DV218321
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|349807865|gb|FQ402256.1|FQ402256
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71890565|gb|DT039620.1|DT039620
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAA
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAA-
EST: gi|349812708|gb|FQ409867.1|FQ409867
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACTTCATGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCCCGTTCAAATGGAAGTT
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTT
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71871639|gb|DT020694.1|DT020694
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71890799|gb|DT039854.1|DT039854
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|30125976|gb|CB911315.1|CB911315
EST:     CTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: CTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|349823439|gb|FQ423250.1|FQ423250
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71864683|gb|DT013738.1|DT013738
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|351046057|gb|FQ441440.1|FQ441440
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|30132603|gb|CB917942.1|CB917942
EST:     CTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: CTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71877393|gb|DT026448.1|DT026448
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|349820030|gb|FQ404752.1|FQ404752
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|352777370|gb|FQ474004.1|FQ474004
EST:     TCAACATCATCATCAAGAATGATCCCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGGT-TTCAAATGGAAGTTTCAAAGA
genomic: TCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGC-GTGTTCAAATGGAAG-TTCAAAGA
EST: gi|351045231|gb|FQ451679.1|FQ451679
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71871652|gb|DT020707.1|DT020707
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGA-G
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|33401697|gb|CF207324.1|CF207324
EST:     CATCATCAAGAATGATCCCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: CATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|351043504|gb|FQ428976.1|FQ428976
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|352790540|gb|FQ478180.1|FQ478180
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|351055909|gb|FQ453370.1|FQ453370
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|71873299|gb|DT022354.1|DT022354
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|110358181|gb|EC922212.1|EC922212
EST:     GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: GGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
EST: gi|352764976|gb|FQ473624.1|FQ473624
EST:     CTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGA                         TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG
genomic: CTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGAgtatattgaa ... ttttaaacagTGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAG