1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGCAACAGGTTCTCACATTGATGCTATTCCATACTCTGGGAAATATGATGGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGgtgtgcaacttgctttactgttgtaaatgtggatctctaagatgatatgttgcaaatgatggaaatagattatcacattgaagctatgaagtaggcaagt...
species | Vitis vinifera |
transcript | Vv05s0020g04900.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAG GTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGAEST: gi|161720481|gb|FC070593.1|FC070593
genomic: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGgtgtgcaact ... aattttacagGTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGA
EST: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAG GTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGAEST: gi|37184125|gb|CF603479.1|CF603479
genomic: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGgtgtgcaact ... aattttacagGTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGA
EST: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAG GTCTGGTTTCAAACCTAGAAGGCCATTAGAGGTGATCTTGTTCACTTCAGAEST: gi|161719418|gb|FC067665.1|FC067665
genomic: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGgtgtgcaact ... aattttacagGTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGA
EST: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAG GTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGAEST: gi|27582780|gb|CB005475.1|CB005475
genomic: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGgtgtgcaact ... aattttacagGTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGA
EST: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAG GTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGA
genomic: GGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGgtgtgcaact ... aattttacagGTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCAACAGGTTCTCACATTGATGCTATTCCATACTCTGGGAAATATGATGGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGgtgtgcaacttgctttactgttgtaaatgtggatctctaagatgatatgttgcaaatgatggaaatagattatcacattgaagctatgaagtaggcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaata