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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAGgtatattttttgcataggaaaaaaatgcagacctctttttttatttcatatctaatgataatcccaaaatggctgaaaattattcagactgggcatgcatttttttcaacatggaaatatttgatggatgatgtttctgaacaaggccgctacattttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g04210.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G38760.1 (Glycine max), 5'ss of exon 4
GTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAGgtatattt-tttgca-taggaaaaaaatgcagacctctttttttatttcatatctaatgataatcccaaaatggctgaaaattattcagactgggcatgcatttttttcaacatggaaatatttgatggatgatgtttctgaacaaggccgctacattttgcag
|||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| ||||||||||||||||| ||||   |  ||| || |  |     | |  |||  ||| | |   |||| |  |       |  ||   ||||| | | ||    | |  |||                                                             
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtatatttatttgttctctgaataacaaaccttggtgtagtttggtttgagaa--aatgttgtttatgttttcacttttaattactaaaacgtcacct-tatt-------------------------------------------------------------

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G28980.1 (Glycine max), 5'ss of exon 4
GTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAGgtatattt----tttgcataggaaa------aaaatgcagacctctttttttatttcatatctaatgataatcccaaaatggctgaaaattattcagactgggcatgcatttttttcaacatggaaatatttgatggatgatgtttctgaacaaggccgctacattttgcag
|||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||||  ||||    | || |||  |||      ||  ||   |  | ||||||  |||||| |    |  |||   | || |     ||  | |       |                                                                        
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcattttatgttttaacttctaattactaaaatgtcaccttattt------------------------------------------------------------------------

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G28980.2 (Glycine max), 5'ss of exon 4
GTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAGgtatattttttgcataggaaaaaaatgcagacctctttttttatttcatatctaatgataatcccaaaatggctgaaaattattcagactgggcatgcatttttttcaacatggaaatatttgatggatgatgtttctgaacaaggccgctacattttgcag
|||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||||  |||| |    |    || |||    |   | |      || |  | | |  | ||  |       |  ||   ||||| | | |     | |  ||||||                                                          
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGGTgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcatt-ttatgttttaacttctaattactaaaatgtcacct-tattttt----------------------------------------------------------

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G43780.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAGgtatattttttgcataggaaaaaaatgcagacctctttttttatttcatatctaatgataatcccaaaatggctgaaaattattcagactgggcatgcatttttttcaacatggaaatatttgatggatgatgtttctgaacaaggccgctacattttgcag
|| ||||||||||| |||||||||   |||||||| ||||||||||| || ||| |||||||||||||||||||||| || || |||||| |           |     |  | || | ||  ||| ||| |      ||| |||     | ||       |||||| | |  ||  ||       | ||||  |                                                      
GTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAGgtaaaacccaattccgg-----agctccaaatctgatttcttact------ctagtga-----ctaa-------gaaaataacttggatcggatggttttgttttgtag-----------------------------------------------------

upper sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G14680.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAGgtatattttttgcataggaaaaaaatgcagacctctttt--tttatttcatatctaatgataatccca--aaatggctgaaaattattcagactgggcatgcatttttttcaacatggaaatatttgatggatgatgtttctgaacaaggccgctacattttgcag
|||||||| || ||||| || ||    || ||||| ||||||||||||||||||||||| |||||| | ||||| |||||||| |||||| ||      | |   |||  |||   ||| |  | |   | |  |||  | || | |   ||  |  |||    |||   || ||  ||  |                                                                       
GTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTTCTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGgtaaataaac-acttctcaaaccaattgggacataatgtaactaagctcaagtgtattcaatttctgatcaaagatttgatggttgttttgatag-----------------------------------------------------------------------