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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTACAGTGGTGAGCTCGTTGCTGAAGAAAACTTCCTAGGAATCTGCAGCAGAGAATTACTTGCTAGAGGCTGTGAACTTCTCAAACGCACCCGAAAAGgtataatcattttatctaattctgaattacttgtataattccctctcacaatcataattctcatacatgtgtgttatggttaataatgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g04020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G28820.1 (Glycine max), 5'ss of exon 5
AGTTACAGTGGTGAGCTCGTTGCTGAAGAAAACTTCCTAGGAATCTGCAGCAGAGAATTACTTGCTAGAGGCTGTGAACTTCTCAAACGCACCCGAAAAGgtata-atcattttatctaattctgaattacttgtataat-tccctctc------acaatcataattctcat--acatgtgtgttatggttaataatgcag-----------------------------------------------------------
|| | ||||||||| || ||  | |||||||| ||| | || || ||||| ||||||||| | || ||||| |||||||| ||||||||||| || ||||||||| || || |||  | |   | |  | | | | | |  ||  | ||      | || || |  |  |||   ||| | || | ||| | || |                                                                
AGCTTCAGTGGTGAACTTGTCCCAGAAGAAAATTTCTTGGGTATATGCAGTAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAGgtatatattatattacatcaaatttaccttcctatgttacatctttgtctttgagaaaaacagagattccattttcatttttggtttggcttatgacattttttaaggttatagttggtcattggaaagggatttgatttgatgagagaattgtgtgcag

upper sequence: Vv05s0020g04020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G38990.1 (Glycine max), 5'ss of exon 4
AGTTACAGTGGTGAGCTCGTTGCTGAAGAAAACTTCCTAGGAATCTGCAGCAGAGAATTACTTGCTAGAGGCTGTGAACTTCTCAAACGCACCCGAAAAGgtata--------atcattttatctaattctgaattacttgtataattccctctcacaatcataattctcatacatgtgtgttatggttaataatgcag-------------------------------------------------
|| | ||| ||||| || ||  |||||||||| ||| | || || ||||| ||||||||| | || ||||| |||||||| ||||||||||| || |||||| ||        | | |  ||| | ||| ||  |  |||| | |        |   | | ||  ||  | |   |  || | ||  |||  | |   |                                                 
AGCTTCAGCGGTGAACTTGTCCCTGAAGAAAATTTCTTGGGTATATGCAGTAGAGAATTATTAGCCAGAGGTTGTGAACTCCTCAAACGCACACGCAAAGgtgtatatgatttaccttcctatgttattatgtttgtcttggagagaaagaagttgtagttattttttgcttggcttagtat-atttttaggattatggggtttagtcaatggaaagggattttatctgatgagagaattgtgtgcag