1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCACTTGCTGACCTTCAGGCTGATGAGGATCAGGCTTATAGAAAGATTCGACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacagagatcctgaggtcctataaattttcattctatgtaatcttatgattatttttatttttatttatgtatttatttattttttaacaaaatgtttttcttttccttttggaaaatacag
species | Vitis vinifera |
transcript | Vv05s0020g03900.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATGTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|71871064|gb|DT020119.1|DT020119
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|77585608|gb|DV221898.1|DV221898
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|71890772|gb|DT039827.1|DT039827
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|77580898|gb|DV219373.1|DV219373
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|71855034|gb|DT004089.1|DT004089
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|71868214|gb|DT017269.1|DT017269
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|71873149|gb|DT022204.1|DT022204
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAAEST: gi|77578681|gb|DV218125.1|DV218125
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
EST: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGG GGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
genomic: GACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacaga ... gaaaatacagGGAATGGATTTTACAACTGACAAGTTGAGGTCTTTGGTGCGGAAATGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACTTGCTGACCTTCAGGCTGATGAGGATCAGGCTTATAGAAAGATTCGACTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACAAACTTTTGGgtatgacagagatcctgaggtcctataaattttcattctatgtaatcttatgattatttttatttttatttatgtatttatttattttttaacaaaatgtttttcttttccttttggaaaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA