1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACCCTCCACATGATTGGAATGGTGATCCTTGTTTTCCTAGTCAGTACTCATGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggggcctgaaatgacagaataatttgttgtccatgctttattttatactgctgctgctgtttgttttcccatttttagagacaacttaaacttattttctttatatcttgtttcag
species | Vitis vinifera |
transcript | Vv05s0020g03030.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAAEST: gi|110715874|gb|EE094419.1|EE094419
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
EST: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAAEST: gi|110717731|gb|EE093842.1|EE093842
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
EST: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAAEST: gi|110717898|gb|EE094155.1|EE094155
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
EST: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCTCCACATGATTGGAATGGTGATCCTTGTTTTCCTAGTCAGTACTCATGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggggcctgaaatgacagaataatttgttgtccatgctttattttatactgctgctgctgtttgttttcccatttttagagacaacttaaacttattttctttatatcttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG