Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccactttctattgattgcgctaatagcttgaattttccctgtgtcaccattattctttttctatctaaactgctgaacctttttt...

Basic information

species Vitis vinifera
transcript Vv05s0020g02530.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g17080.1 (Oryza sativa), 5'ss of exon 4
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaa-ggattgtcaccactttctattgattgcgctaatagcttgaattttccctgtgtcaccattattctttttctatctaaactgctgaacctttttt
|||||||||||||||||||||||  | ||||||||| | ||||| || |||||||| ||||| |      || | |  |  || || |  ||    | | | | ||   |||||  |  | ||| || ||    ||  ||      || |  |  ||| | 
GATTATGTTGCAACAAGGTGGTATCGTGCACCTGAACTTTGTGGATCTTTTTTCTCTAAGgttagtcaccttcttaatatgttgtaatttttttatttaaatcatggtatttccaagaat-acccttgtttccatttcattattgttgttatatttttctc

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g05160.1 (Oryza sativa), 5'ss of exon 4
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcacca-ctttctattg-attgcgctaata-gcttgaattttccctgtgtcaccattatt--ctttttctatctaaactgctgaacctttttt
|||||| ||||||||||||||||| | ||||| ||  ||||||| || ||||||||||||||   |      ||   |  ||| ||||| ||   | || |  ||   ||      |  |||     || ||  |||| |  | ||        ||| |      
GATTATATTGCAACAAGGTGGTACCGAGCACCAGAGCTGTGTGGATCTTTTTTCTCCAAGgttgtaatcacatctttaattttatattggatcatgatattctgcaaaaagaaatacattgttgttctttttacctttattaacctggggcagcgaagca-----

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G089484_T01 (Zea mays), 5'ss of exon 4
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccactttctattgattgcgctaatagcttgaattttccctgt----gtcaccattattctttttctatctaaactgctgaacctttttt
|||||||||||||| ||||||||| | ||||| || |||||||| || || ||||||||||| |  || ||   |  || |    ||||||  | |   | ||   |   |  | ||    ||||  ||   |  |||| ||| | | |  || | |   ||| 
GATTATGTTGCAACTAGGTGGTACCGAGCACCAGAGTTGTGTGGATCTTTCTTCTCCAAGgttagtggttttctaa-acgtgtgtttgatt-tggtgtcaactatgacactgtcagtaatagtcatgatctcttcttttttat-tgatccactaatcaaattt-

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G017351_T01 (Zea mays), 5'ss of exon 3
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaagga-ttgtcaccactttcta--ttgattgcgctaatagcttgaattttccctgtgtcaccattattc--tttttctatctaaactgctgaacctttttt
|||||||||||||| ||||||||| | ||||| ||  ||||||| ||||||||||| ||||| |  ||  || | | ||  ||  |  |||||  |  | ||      |        |   |||    | |||  |||| || |   ||  |   ||  |     
GATTATGTTGCAACTAGGTGGTACCGAGCACCGGAGCTGTGTGGATCATTTTTCTCAAAGgttagtggtcttctgaacatatttaaatttgatgtcaatcatgagacaagaaagatgttcatcatttcttttcatttttgctgttccaatagtctaattt-----

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G02220.1 (Glycine max), 5'ss of exon 4
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccactttctattgattgcgctaatagcttgaattttccctgtgtcaccattattctttttctatctaaactgctgaacctttttt--
||||||||||||||||||||||| || || |||||||||||||| || ||||||||||||||  ||    ||| |||| ||| |  ||  ||  ||  |  |||    |    || |  |||   |     | |   | ||      |  | | |||| |  
GATTATGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGgttcaatatctgttaccaatttatcctggatg-actgctctctttttctcatact-tagcacagcttgcaatctaaaagcttgggcacacagctttttctta

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G38510.1 (Glycine max), 5'ss of exon 3
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccactttctattgattgcgctaatagcttgaattttccctgtgtcaccattattctttttctatctaaac-tgctgaacctttttt
||||| ||||||||||||||||| || || |||||||||||||| || ||||||||||||||  ||    ||| |||| ||| |  ||  ||        | ||   |  | | |    || | ||    | |     | |   |    ||      |  |
GATTACGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGgttcaatatctgttaccaatttatcctggatgactgctctgtttatctcatacttagcacagc-ttgcaatctaaaagtttgggcacattgctttcctcct

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G28120.1 (Glycine max), 5'ss of exon 4
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccacttt---ctattgattgcgctaatagcttgaattttccctgtgtcaccattattctttttctatctaaactgctgaacctttttt
|||||||||||||| |||||||| ||||| ||||| |||||||| || ||||| ||||||||  ||    ||| |  ||||    |||||  ||  | | || | |  | |||  ||    | |   |||  | |  |  || | |  | || |         
GATTATGTTGCAACCAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatatatgttatgacttatgactattatttaagatcattggtcaattttatccaagatgat--ttacccctgcttgatatgatttactaagttaaaaa-

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G10940.4 (Glycine max), 5'ss of exon 4
GATTATGTTGCAACAAGGTGGTACAGGGCACCTGAATTGTGTGGTTCATTTTTCTCCAAGgtaaaaggattgtcaccactttctattgattgcgctaatagcttgaattttccctgtgtcaccattattcttttt--ctatctaaactgctgaacctttttt
||||||||||||||| ||||||| ||||| ||||| |||||||| || ||||| ||||||||  ||     || |  ||| |   || |   || |  |   ||  ||      ||  |  ||  |  |   | |   |  ||||  |    |   |  |  
GATTATGTTGCAACACGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGgtgcaatataagttatgactattatttaagatcgttggtcaattttatccaatatgatttgcccctgcttgatatgatttactaagttaaaaagtttgat--