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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAAgtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacag

Basic information

species Vitis vinifera
transcript Vv05s0020g02160.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G10620.1 (Glycine max), 5'ss of exon 4
TGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAAgtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacag--
||||  || ||||||||||| || ||||| ||||||||||||||||| |||||||| ||| | ||  | ||||||||||||||||| ||| ||||| |||||||||||||  ||      ||    || |   |   | |  ||   | ||   |||||||  | ||  | ||  |||      
TGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAgtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctgctatgtacatgtat--gtaactgattaacaggcagccaattgcatttgtgcag

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G28460.1 (Glycine max), 5'ss of exon 4
TGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAAgtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacag
||||  || ||||||||||| || ||||| ||||||||||||||||| |||||||| ||| | ||  | || |||||||||||||| ||| ||||| |||||||||||||  ||      ||    || ||      | | || | || ||   |||||||  ||||  ||||  ||| |||
TGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccg--tatacatgctagtaactgattaacaggctgccaaatgcatttgcag

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G28460.2 (Glycine max), 5'ss of exon 1
TGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAAgtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacag
                      | ||||| ||||||||||||||||| |||||||| ||| | ||  | || |||||||||||||| ||| ||||| |||||||||||||  ||      ||    || ||      | | || | || ||   |||||||  ||||  ||||  ||| |||
----------------------TTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccg--tatacatgctagtaactgattaacaggctgccaaatgcatttgcag