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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAGgtgttaccatctgtcctataacactaatgagtttctctgtctaatttgagatataggcatatcttcttagcttatgcttccaattttctgatatgttgaa...

Basic information

species Vitis vinifera
transcript Vv05s0020g01880.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G09370.1 (Glycine max), 5'ss of exon 3
GTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAGgt--gttac-catctgtcctataacactaatgagtttctctgtctaatttgagata---taggcatatcttcttagcttatgcttccaattttctgatat--gttgaa----------------------------
| | ||||||| || ||||| |||||||||||||||| |||| ||||| ||   ||| |||| |||||| ||||| |||||| |||||||||||||  || |  ||||     | | | | |  |  |||  | | |||  |||||  ||   || | | ||  |   ||  ||     ||||  | | ||| |  |||||                             
GCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGgtgggtcatacatccaaattgtcatattcttttgttgttttctctgttttgatttaaattaaggagataattccagtctac---cccaagatacagatgtttgttgatttatcctgatggatatacttcactttag

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 3
GTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAGgtg--ttac-catc-----tgtcctataacactaatgagtttctctgtctaatttgagatataggcatatcttcttagcttatgcttccaattttctgatatgttgaa
| | ||||||| || |||||  ||||||||||||||| |||| ||||| ||   ||| |||| |||||| ||||| |||||| ||||||||||||||  | |  ||||     || | |||     |  |   | ||||||| |   || | || || | | ||  |   ||  ||     ||||  | | ||  | |    
GCTAGCTGCATTAAGCTGGAACGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGgtgggtcatgcatccaaattgccatattttttttgttgttctctctgttttgatttaaat-taaggagataattccagtctac---cccaagatacagacttct----

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G28660.1 (Glycine max), 5'ss of exon 4
GTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAGgt--gttaccatctgtcctataacactaatgagtttctctgtctaat-ttgagatataggcatatcttcttagcttatgcttccaattttctgatatgttgaa
| |||||||||||  ||||| |||||||||| |||| || || ||||| || ||||| || | |||||| ||||| |||||||  ||| |||||||  ||    |    | || |  |  |  | | | ||  | | | || |    || |  ||   |  || |  |||||  |    || || | | |  |    
GCTGGCTGCATCATGCTGGAATGGTGAAGGTGCTTTGCTGTTTACATCAAGCTCTGCTCCTTATGATTGTAATGATAATGGATTGTGTCATGAGgttggtcttaaaacattctttggc--tgttcactctcagtcttttatatcttaatttgtgccattgatcatcacttattttcttcatctt-taagacttcagg

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G10460.4 (Glycine max), 5'ss of exon 3
GTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAGgtgttaccatctgtcctataacactaatgagtttctctgtctaatttga---gatataggcatatcttcttagcttatgcttccaattttct-gatatgttgaa
| |||||||||||  ||||| |||||||||| |||| || || ||||| || ||||| || | |||||| ||||| |||||||  ||| | ||||| |   | |     |  |  |  |      | |||||||||  | |      || |  |||  |  || |  |||||  |||  || |||  ||  |  ||  
GCTGGCTGCATCATGCTGGAATGGTGAAGGTGCTTTGCTGTTTACATCAAGCTCTGCTCCTTATGATTGTAATGATAATGGATTGTGTCACGAGgt-tggtcttaaaaacatt--ctttggctgttctctctgtcttttatagcttaatttgtgcaattgatcatcacttatttttctcatcttcaagacttcatgt-

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G39080.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAGgtgttaccatctgtcctataacactaatgagtttctctgtctaatttgagatataggcatatcttcttagcttatgcttccaattttctgatatgttgaa---
|   || ||||||||||||| ||| ||||| || ||| |||||||||||||||||||||| | |||||||  ||| || |||  |||  | ||||| ||  | || |  |   || ||  ||   | | || || |  |      || |        || |   |||   |  |  ||||  |  |||  |  |   
GAATGCAGCATCAAACTGGAATGGCGAAGGATCATTCTTATTCACATCTAGTTCTGCACCTTATGATTGCTTTGATAACGGAGAATGCAACGAGgt-ttgtc-tcagcacctgaatacctattt-tctttcagttttctccatcctaaaattcctagttttagactttaacaccacatttagtattattctatatca