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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTAAATTTGGTGCTTCTTGCAAGTATCACCATCCAAGACAGGGAGGAGGAACTGTTAGCCCTGTGACACTAAACTATTTTGGATATCCATTGCGTCCGgtctgtgtttgttgcaactttttttaatctatcctgttaatgttagatttattggaatcacatagcctgaagtttgcagttaagttggctcaaagcttgatatgttgctacag

Basic information

species Vitis vinifera
transcript Vv05s0020g01650.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G37980.1 (Glycine max), 5'ss of exon 4
CTGTAAATTTGGTGCTTCTTGCAAGTATCACCATCCAAGACAGGGAGGAGGAACTGTTAGCCCTGTGACACTAAACTATTTTGGATATCCATTGCGTCCGgtctgtgtttgttgcaactttttttaatctatcctgttaatgttagatttattggaatcac--atagcct---gaagtttgcagttaagtt--ggctcaaagcttgatatgttgctacag
 || ||||||||||| || |||||||| |||||||| || ||||    ||| |||| || ||||||| ||||||| |||| |||||| ||||||||   ||||||| |  |||     ||  |       ||  |||     ||     | ||||  ||||   |  |||   || | | | ||||  |||    ||  ||  ||  |   |    ||||
ATGCAAATTTGGTGCGTCCTGCAAGTACCACCATCCTAGGCAGGTGCCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGATACCCATTGCGAGTGgtctgtatcagtttgtgtttactgcgtaaaattatgtgtgctttgtgaattttggtgtcactcttttcctaacgatgatggaagttttgttcaaacttgaattttcgtgcatgataacag

upper sequence: Vv05s0020g01650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G28820.1 (Glycine max), 5'ss of exon 4
CTGTAAATTTGGTGCTTCTTGCAAGTATCACCATCCAAGACAGGGAGGAGGAA---------CTGTTAGCCCTGTGACACTAAACTATTTTGGATATCCATTGCGTCCGgtctgtgtttgttgcaactttttttaatctatcctgttaatg---ttagatttattggaatcacatagcctgaagtttgcagttaagttggctcaaagcttgatatgttgctacag----------
         |||| | ||||||||||| ||||| || || |||| ||||| |          ||| || ||||||| ||||||| |||| ||||||||||||||| | ||||||| |   ||      |||  ||    |  ||    |||   ||  || |  ||   |    |   ||||   | | | |  | || | ||  || |||| |||||  || |           
---------TGGTTCATCTTGCAAGTACCACCACCCCAGGCAGGCAGGAGCAGGGGGCGCTGCTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACAGgtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctg---ttttgttttctgatcatggaaat--attttgatccgagtttga-atgtttataaatatgataacag

upper sequence: Vv05s0020g01650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G18550.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGTAAATTTGGTGCTTCTTGCAAGTATCACCATCCAAGACAGGGAGGAGGAA------CTGTTAGCCCTGTGACACTAAACTATTTTGGATATCCATTGCGTCCGgtctgtgtttgttgcaactttttttaatctatcctgttaatgttagatttattggaatcacatagcctgaagtttgcagttaagttggctcaaagcttgatatgttgctacag
      ||||||||||||||| |||||||||||||| ||||| |||||||||       ||||||  |||||  | ||||| ||  | ||||  ||||| || ||||| ||| |   |  |  | |  | |   |  |    |   | ||   |||    | ||      |  |||  | |      |||||  || | |  | |||    || |||||
------ATTTGGTGCTTCTTGTAAGTATCACCATCCTAGACAAGGAGGAGGAGGAGATTCTGTTACTCCTGTCTCCCTAAATTACATGGGATTCCCATTACGCCCGgtttgt-tcaatcccgccatgctct---cggtttcataggtcttttgttttgctgtattgtggtgaatgatctct----caaagtttccttacaaatggat----tgttacag