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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctggttgttttgtataaaatgccttccctaatttttcttcttattttattgtattttatattcggagattgggagatttgaatgtcccaaatt...

Basic information

species Vitis vinifera
transcript Vv05s0020g01440.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877047|gb|DT026102.1|DT026102
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|77582258|gb|DV220092.1|DV220092
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|77578306|gb|DV217933.1|DV217933
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|77584529|gb|DV221330.1|DV221330
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|77581182|gb|DV219518.1|DV219518
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|110417657|gb|EC983731.1|EC983731
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|34415518|gb|CF414272.1|CF414272
EST:     GCAAAGTTGGAGGGTCAAAGTTGGACACTCAAGTTAAGGTCTANCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: GCAAAGTTGGA-GGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|110405060|gb|EC970590.1|EC970590
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|34319828|gb|CF372582.1|CF372582
EST:     TGCAAAGTTGGAGGTCAAAGTGGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|110360839|gb|EC924252.1|EC924252
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|71872568|gb|DT021623.1|DT021623
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|71890487|gb|DT039542.1|DT039542
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|77578619|gb|DV218101.1|DV218101
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|77580102|gb|DV218941.1|DV218941
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|110379884|gb|EC945106.1|EC945106
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|71868186|gb|DT017241.1|DT017241
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|71873162|gb|DT022217.1|DT022217
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|71874260|gb|DT023315.1|DT023315
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|110417988|gb|EC984094.1|EC984094
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: gi|351016864|gb|FQ424291.1|FQ424291
EST:     TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT                         GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTTGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctggttgttttgtataaaatgccttccctaatttttcttcttattttattgtattttatattcggagattgggagatttgaatgtcccaaatt

- -  GCAAAG
- - - - -  TTGGAG
- - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc