Sequence
atgc intronic sequence ATGC exonic sequenceGTCATAAATGTGTACCTCGAGTTACTGAAAGAGAGAGAAAAGAGAGAACCGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGgttagttacttgttcttttatggaaagttgttgtaccatcacacttagctttatataccatgcatttacttagaacattgttggcccattgctcatccat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g29630.1 (Oryza sativa), 5'ss of exon 4
GTCATAAATGTGTACCTCGAGTTACTGAAAGAGAGAGAAAAGAGAGAACCGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGgttag-ttacttgt-tcttttatggaaagttgttgtaccatcacacttagctttatatacca-tgcatttacttagaacattgttggcccattgctcatccat
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GTCATTAATTTGTACCTTGAATTGTTAAAGGAGAGGGCGCAAAGAGAACCAAAAAGATTTTTGAAATGCCACTTCTTCAATACATTCTTTTATAAGAAGgttagataatttgcatatttttctttccggtgctgtatgatggaatgttcttttcaatatttctgtagttctgttacacac-accattttat-gatcttcag-
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g22400.1 (Oryza sativa), 5'ss of exon 4
GTCATAAATGTGTACCTCGAGTTACTGAAAGAGAGAGAAAAGAGAGAACCGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGgttagttacttg--ttcttttatggaaagttgttgtaccatcacacttagctttatataccatgcatttacttagaacattgttggcccattgctcatccat
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GTCATTAATTTGTACCTTGAATTATTGAAGGAGAGAGAGGCAAGAGAACCAAAAAGGTTTTTGAAATGCCATTTCTTTAATACATTTTTTTATAAGAAGgttagatcataagcttcttttgctttcacgtattctatcttcgtattca-tattaaatgttct-tatcgtctctgtactttataactttttttagcatttct
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G849959_T02 (Zea mays), 5'ss of exon 4
GTCATAAATGTGTACCTCGAGTTACTGAAAGAGAGAGAAAAGAGAGAACCGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGgttag-ttacttgttcttttatggaa-agttgttgtaccatcacacttagctttatataccatgcatttacttagaacattgttggcccattgctcatccat-
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GTTATTAATCTGTACCTTGAATTGTTGAAGGAGCGAGAAAAAAGAGAACCAAACAGGTTTCTGAAATGTCATTTCTTTAATACATTCTTTTATAAGAAGgttagattgtttactcctttatgcttcaattattgcacctgcaggatg---tttgcatcttttttccgtactaaaattggcatttttttgtgtatcctccttg
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G010505_T01 (Zea mays), 5'ss of exon 4
GTCATAAATGTGTACCTCGAGTTACTGAAAGAGAGAGAAAAGAGAGAACCGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGgttagttacttgttcttttatggaaagt-tgttgtaccatcacacttagctttatataccatgcatttacttagaacattgttggcccattgctcatccat
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GTCATTAATCTGTACATTGAACTGTTAAAGGAGAGGGAAAAAAGGGAACCCAACAGGTTTTTGAAATGCCATTTCTTCAATACATTCTTCTACAAGAGGgt-attggattttcgcttcacatactgcatgcataaatatcctttgaaatgctggtcctattatatcatatttgagacttatggttttatactgcataggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351032678|gb|FQ462392.1|FQ462392EST: CGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAG TTAATAAGTGGGAGGAATTCCTATGACTATAAATCTGTTAGAAGATGGACT
genomic: CGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGgttagttact ... atgttcccagTTAATAAGTGGGAGGAATTCCTATGACTATAAATCTGTTAGAAGATGGACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATAAATGTGTACCTCGAGTTACTGAAAGAGAGAGAAAAGAGAGAACCGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGgttagttacttgttcttttatggaaagttgttgtaccatcacacttagctttatataccatgcatttacttagaacattgttggcccattgctcatccat
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