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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCACGACCATGTTTATAACCAAGATGGCATCCCGCGGACAAGCTGCATATTCAGTTGCAGCAGTTGTAGTAGAACAGACAATTGGCTCAATCAGAACTgtatgcaaattggcgtaaagaatgtttagttttcactttgcccattaatttcggtaatgaccatgaaagatatttctatgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00890.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G04590.1 (Glycine max), 5'ss of exon 4
TTTCACGACCATGTTTATAACCAAGATGGCATCCCGCGGACAAGCTGCATATTCAGTTGCAGCAGTTGTAGTAGAACAGACAATTGGCTCAATCAGAACTgtatgcaaattggcgtaaagaatgtttagttttcactttgccc-attaatttcggtaatgaccatgaaagatattt--------ctatgcag
| | |  ||  || ||||  | ||     ||||    ||||||||||| |||||    |||||| |||||||||| ||||||||||| || ||| |||||||| ||| |   |    || ||  | |  |||| | |||     |||        |||| |  ||  ||   | ||        | ||||||
TATGATAACTGTGATTATTTCAAAAGCATCATCTGAAGGACAAGCTGCTTATTCTACAGCAGCAATTGTAGTAGAGCAGACAATTGGTTCTATCCGAACTgtacgcacaccagaaacaacaaactct--tttttattttattttattgcagagtataatcagtatataaatgactttatccctccaatgcag

upper sequence: Vv05s0020g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G17930.1 (Glycine max), 5'ss of exon 4
TTTCACGACCATGTTTATAACCAAGATGGCATCCCGCGGACAAGCTGCATATTCAGTTGCAGCAGTTGTAGTAGAACAGACAATTGGCTCAATCAGAACTgtatgcaaattggcgtaaagaa--tgtttagttttcact-ttgcccattaatttcggtaatgaccatgaaagatatttct---atgcag
| | |  ||  || ||||  | |      |||||   ||||||||||| |||||    ||||||  ||||||||| ||||||||||| || ||| |||||||||||| |   ||  ||| ||  | || | ||||   | ||||  | ||   || ||| |    ||||    ||| |||   ||||||
TATGATAACTGTGATTATTTCAAGAGCATCATCCGAAGGACAAGCTGCTTATTCTACAGCAGCAAGTGTAGTAGAGCAGACAATTGGTTCTATCCGAACTgtatgcacaccagcaaaaacaaactcttcatttttttttattgcagagtataatcagta-tataaatgacctttatctctccaatgcag

upper sequence: Vv05s0020g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G04600.1 (Glycine max), 5'ss of exon 7
TTTCACGACCATGTTTATAACCAAGATGGCATCCCGCGGACAAGCTGCATATTCAGTTGCAGCAGTTGTAGTAGAACAGACAATTGGCTCAATCAGAACTgtatgcaaattggcgtaaagaatgtttagttttcactttgcccattaatttcggtaatgaccatgaaagatatttctatgcag---------
| |      | || |||| || || |   ||||| | |||||||  || |||||  | ||||||  ||||||||| ||| ||||||| || ||||||||||||||||   || |  ||| ||    ||  |||    || |   || || | | | | ||  ||  ||   | ||| ||  |          
TATGTTAGGCCTGATTATTACGAAAACATCATCCAGGGGACAAGAAGCTTATTCTATAGCAGCAACTGTAGTAGAGCAGGCAATTGGTTCTATCAGAACTgtatgcaccctgacaaaaaaaagtactaacttt----tttctttttgatattgctgaagaatatataaatgacttccatttatccaattcag