1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCTTGGGAAGGACGGGCGTATGAATATTGTATGGACAACCTAAGGAACATGGGGTTTCCTGTGGATGGACTTGCATTTGACCCAAACTTGgtgaaatctttatctgtgcaactagagaactttaaattgtgacaccattcttaaatttattgaatttgtattctctttcatgtttttgagtgcattctgtttgattgttttgtgtag
species | Vitis vinifera |
transcript | Vv05s0020g00880.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAAGGAACATGGGGTTTCCTGTGGATGGACTTGCATTTGACCCAAACTTG GTTATTAGAGGCCTTGTAATAGACAAAGAGAAAGGAAACTTGGTTAAGCCTEST: gi|352763403|gb|FQ471715.1|FQ471715
genomic: TAAGGAACATGGGGTTTCCTGTGGATGGACTTGCATTTGACCCAAACTTGgtgaaatctt ... ttttgtgtagGTTATTAGAGGCCTTGTAATAGACAAAGAGAAAGGAAACTTGGTTAAGCCT
EST: AAGGAACATGGGGTTTCCTGTGGATGGACTTTGCATT-GACCCCAACTTG GTTATTAAAGGCCTEST: gi|352772410|gb|FQ469935.1|FQ469935
genomic: AAGGAACATGGGGTTTCCTGTGGATGGACTT-GCATTTGACCCAAACTTGgtgaaatctt ... ttttgtgtagGTTATTAGAGGCCT
EST: TAAGGAACATGGGGTTTCCTGTGGATGGACTTGCATTTGACCCAAACTTG GTTATTAGAGGCCTTGTAATAGACCAAGAGAAAAGAAACTTGCTTAAGCCT
genomic: TAAGGAACATGGGGTTTCCTGTGGATGGACTTGCATTTGACCCAAACTTGgtgaaatctt ... ttttgtgtagGTTATTAGAGGCCTTGTAATAGACAAAGAGAAAGGAAACTTGGTTAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGGGAAGGACGGGCGTATGAATATTGTATGGACAACCTAAGGAACATGGGGTTTCCTGTGGATGGACTTGCATTTGACCCAAACTTGgtgaaatctttatctgtgcaactagagaactttaaattgtgacaccattcttaaatttattgaatttgtattctctttcatgtttttgagtgcattctgtttgattgttttgtgtag
- - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA