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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGGAAAGCATGATTTCTCTGCTTTTGTCAATGCATCACATAATGATCGGTCACCAAACCCAGTTAAGAATATTTTCCGGTTCGATGTCAATGAAATGgtaattgcaagcttcagaagaatgacactttaaaagaactgttatttcgtatggtagtctgagagattcagttgtatctgttttaaccttctttcatttctatgtagatgtttttggaactgatagttaattgtattatcgcccag

Basic information

species Vitis vinifera
transcript Vv05s0020g00860.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00860.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G17960.1 (Glycine max), 5'ss of exon 3
CACTGGAAAGCATGATTTCTCTGCTTTTGTCAATGCATCACATAATGATCGGTCACCAAACCCAGTTAAGAATATTTTCCGGTTCGATGTCAATGAAATGgta-attgcaagcttcagaagaatgacactttaaaagaactgttatttcgtatggtagtctgagagattcagttgtatctgttttaaccttctttcatttctatgtagatgttt---ttggaactgatagttaattgtattatc--gcccag
   ||| ||||||||||||||||| |||| ||||||||| || |||||||||  |||| | ||||| ||| || | ||||| |||||| | || |||||||||  |  | || |  |    || |   |||    |  |   ||||   ||||   |  |||    ||| |     || ||| |   | ||||||  | | | || ||| |||     |  ||  | |  ||| || |||| ||  ||  ||
TGTTGGCAAGCATGATTTCTCTGCCTTTGCCAATGCATCCCACAATGATCGGGTACCAGATCCAGTGAAGCATGTATTCCGATTCGATTTGAAAGAAATGgtatgtaactagttctatgtcaa-gtttcttccccaatatcattataa-gtattacacactgt---atttaccca-atttgtatcttctttctttattctatgtgaagacgttaaagcttaaaaggcttattacttctattttcttgcttag