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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCCAACTGTGATGGTTTTGGCTCCAACCCGAGAGCTTGCCACACAAATACAAGACGAGACCATCAAGTTTGGCCGATCTTCTAGGGTCTCTTGCGCGgtatgtcatattagctatttcctctctggccattatcaaattattctagtttctatgcatttaaatactgtttcatcctatgacccaactacttgttttag

Basic information

species Vitis vinifera
transcript Vv05s0020g00470.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g46240.1 (Oryza sativa), 5'ss of exon 4
TGGCCCAACTGTGATGGTTTTGGCTCCAACCCGAGAGCTTGCCACACAAATACAAGACGAGACCATCAAGTTTGGCCGATCTTCTAGGGTCTCTTGCGCGgtatgtcat-attagctatttcctctctggccattatcaaattattctagtttctatgcatttaaatactgtttcatcctatgacccaactacttgttttag-
 ||||| || ||| | |||||||| || ||||||||||||||  ||||||||||||||||  |  |||||||||| ||||| ||||| ||||| ||| | ||| ||  | | | | | |||  | |          ||| ||  ||    | |||        ||||||  |   ||  |  ||| |   |  ||||| |   
GGGCCCTACAGTGTTAGTTTTGGCCCCTACCCGAGAGCTTGCTTCACAAATACAAGACGAAGCAGTCAAGTTTGGTCGATCATCTAGAGTCTCCTGCACTgtaagttctgacttgttttttttttttaatatgaattcacatgcttaatctgtcttgatgaaaaaatacgctggaattttg-gactc--ttgtttgttctcca

upper sequence: Vv05s0020g00470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G03560.1 (Glycine max), 5'ss of exon 6
TGGCCCAACTGTGATGGTTTTGGCTCCAACCCGAGAGCTTGCCACACAAATACAAGACGAGACCATCAAGTTTGGCCGATCTTCTAGGGTCTCTTGCGCGgtatgtcatattagctat---ttcctctctggccattatcaaattattctagtttctatgcatttaaatactgtttcatcctatgacccaactacttgttttag
|||||| |||||  |||||||||||||||| || || ||||| ||||| || ||||| |||  |||||| ||||||||||| ||  | ||||||||| |||| ||||  |   | |||   ||||| | ||   | | | ||  ||||   ||||    || || |     || | ||||   |||      | |   || |||
TGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGATGAGGTCATCAAATTTGGCCGATCATCGCGAGTCTCTTGCACGgtttgtcccaagtgttatctcttcctttttgttgagttttaatctattaatgttt----gccttaatcatttggtgcatctgttgatttcttttccatttgtag