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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCGgtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttcttttagttgatcatttgtgattgttcgtaatgtccaccttcttcttgcttcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G36110.1 (Glycine max), 5'ss of exon 4
GATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCGgtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttcttttagttgatcatttgtgattgttcgtaatgtccaccttcttcttgcttcag
|||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||| ||||| |||||| | || |||  | | | || | || ||   | |      | | | | || |  | ||||    |  |||   || |  ||  |                                   
GATTTGAATCACCCGGAGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCTGATATTCAGTACACAgtgagtctagt-tctcctctacttgtgtata-----tgtgtcatatgctgggttgaaagctgatttgaatgcttgttctttgccag-----------------------------

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G03590.1 (Glycine max), 5'ss of exon 2
GATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCGgtaagttaaatatgt-catttattttcatttgctaactctcttaaatacaa-gtttgatgtttcttttagttgatcatttgtgattgttcgtaatgtccaccttcttcttgcttcag
|||||||| ||||||| |||||||| ||||||||||||||||||||| | ||||||||  |||| |||| |  |||||||| ||  | |   ||   ||||| |   || |     |     ||  |  |||| ||| | ||  | | |  |||                                     
GATTTGAAACACCCGGGGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCCAATATTCAGTTCATGgtaagtttaacttctgtgttctgtttcactctatatcctaagttggggcagtggctgatttttatgtttctggttttttttcag---------------------------------

upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G14490.1 (Glycine max), 5'ss of exon 4
GATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCGgtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttcttttagttgatcatttgtgattgttcgtaatgtccaccttcttcttgcttcag
|||||| | ||||||| |||  ||| ||||| ||||||||||||||| | ||||||||  |||| |||| | ||||||||| ||  | |  || | | |    |   |  |   | |      | ||| |||||||| ||  ||  |||                                        
GATTTGGAACACCCGGGGAACAGGAGGACCAGCATAGGATTTTTGGTGTAGATGGTCCCAATATTCAGTTCACGgtaagtttaacctctgtttcactctatccta--agttgggtcatggctgatttttatgtttctgttttttt-tcag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720955|gb|FC070341.1|FC070341
EST:     ATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCG                         GGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGA
genomic: ATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCGgtaagttaaa ... cttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGA