Sequence
atgc intronic sequence ATGC exonic sequenceTGGAAATAATTTTGAGCGTCGCATGGCACTGAGGAGGACTTGGATGCAATACGAAGCTGTACGTTCTGGCGATGTGGCTGTTCGCTTTTTCATTGGTCTTgtaagtagcatattgcaggctggggcaagtttatttattttttaccaaatcagtattcatccctttgctctggttcttgtgatgtgcacacacaagttgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G04230.1 (Glycine max), 5'ss of exon 3
TGGAAATAATTTTGAGCGTCGCATGGCACTGAGGAGGACTTGGATGCAATACGAAGCTGTACGTTCTGGCGATGTGGCTGTTCGCTTTTTCATTGGTCTTgtaagtagcatattgcaggctggggcaagtttatttattttttacca-aatcagtattcatccctttgctctggttcttgtgatgtgcacacacaagttgc
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CGGAAACAATTTTGAACGTCGCATGGCCCTGAGGAGGTCTTGGATGCAATATGAGGCCGTACATTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTTgtaagcgatgcatttcagacttgtttaagtgaaactatacattagtataattcttgttctagtttatgcacaagtttttcctagaagaattttgttaaag-
upper sequence: Vv05s0020g00400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G06440.1 (Arabidopsis thaliana), 5'ss of exon 4
TGGAAATAATTTTGAGCGTCGCATGGCACTGAGGAGGACTTGGATGCAATACGAAGCTGTACGTTCTGGCGATGTGGCTGTTCGCTTTTTCATTGGTCTTgtaagtagcatattgcaggctggggcaagtttatttattttttaccaaatcagtattcatccctttgctctggttcttgtgatgtgcacacacaagttgc
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TGGAAATAATTTTAAGCGGCGTATGGCATTGAGAAGATCTTGGATGCAATACGAGGCAGTAAGATCTGGCAAAGTAGCTGTTCGATTTCTCATTGGCCTTgtaagtacctc--tgcaagctaacattcctccttggatttatacatatcttagcattaacttggcgtttcttttactcag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708316|gb|FC057475.1|FC057475EST: ACGAAGCTGTACGTTCTGGCGATGTGGCTGTTCGCTTTTTCATTGGTCTT CACAAAGAACCGGCAAGTCAATT
genomic: ACGAAGCTGTACGTTCTGGCGATGTGGCTGTTCGCTTTTTCATTGGTCTTgtaagtagca ... atacctgcagCACAA-GAACCGGCAAGTCAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAAATAATTTTGAGCGTCGCATGGCACTGAGGAGGACTTGGATGCAATACGAAGCTGTACGTTCTGGCGATGTGGCTGTTCGCTTTTTCATTGGTCTTgtaagtagcatattgcaggctggggcaagtttatttattttttaccaaatcagtattcatccctttgctctggttcttgtgatgtgcacacacaagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggcaa