Sequence
atgc intronic sequence ATGC exonic sequenceAACCTGGTCATTTTGCCCGTGAATGCCGTTTGCGTGGTGGTTCTGGAAGACGTCGCAGTCGCAGCCCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGgtgagatggtttgaggaacatgttctatttttatcagttctattattgtggtttattggactggttgccagcctttttttccaaccccccacttccacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G070239_T04 (Zea mays), 5'ss of exon 4
AACCTGGTCATTTTGCCCGTGAATGCCGTTTGCGTGGTGGTTCTGGAAGACGTCGCAGTCGCAGCCCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGgtgagatggtttgaggaacatgttctatttttatcagttct--atta--ttgtggtttattggactggttgccagcctttttttccaaccccccacttccacct
||| | | | | | | ||| | | | || | ||||||||||||||||| ||||||||||| || || ||| | | |||| | ||| || | || |||| ||||||| | |||| | || | || || | || | | || ||
GCATTGGCTCTGGAGGTCTAGGCAGTGGAAGACGTCGCAGCAGGAGCAGGAGCCGCAGTCGCAGCCCTAGATACCGCAGGAGTCCGAGCTATAATAGAAGgtaa--ccatttttttgacttcttagatttc-atcagttgtaaattaactctcaaattttgtcgctcaacctcaaatgctgcttatatctttccttggtaact-
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G17930.3 (Glycine max), 5'ss of exon 4
AACCTGGTCATTTTGCCCGTGAATGCCGTTTGCGTGGTGGTTCTGGAAGACGTCGCAGTCGCAGC---CCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGgtgagatggtttgaggaacatgttctatttttat-----cagttctattatt-gtggtttattggactggttgccagcctttttttccaaccccccacttccacct
||||||||||||| ||||||||||| ||||||||||||| |||||||| || || || || || || | ||| ||||||||||||||||| || |||| |||| | || | || | | ||| || || |||| || || ||| || | | || |||| | | | | |
---CTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCGCCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgctttcctttattcttttgatcctatgtgggcatttgtatttttagtattttcctgaa--gattattttatattttatttg--tctttaatgatat--
upper sequence: Vv04s0069g00800.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G29080.2 (Glycine max), 5'ss of exon 4
AACCTGGTCATTTTGCCCGTGAATGCCGTTTGCGTGGTGGTTCTGGAAGACGTCGCAGTCGCAGC---CCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGgtgagatggtttgaggaacatgttctatttttatcagttctattat-tgtggtttattggactggttgccagcctttttttccaaccccccacttccacct
||||||||||||| |||||||| || ||||||||||||| |||||||| || || || || || || | ||| ||||||||||||||||| || |||| |||| |||| | || |||| || | | | | ||| || | || | | | | |||| | | | | || |
---CTGGTCATTTTGCTCGTGAATGTCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCACCCAGATTCCGTAGGAGCCCAAGTTATGGGCGAAGgtcagattgttttccta-tattttcttttgatcctatgtgcagtatatgagaatttgtattttcctgaagactattttatatttgtcttcaatgatcatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|85153366|gb|DW588056.1|DW588056EST: CAGTCGCAGCCCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAG GAGTTACAGTCCCCGCGGGCGATCCCCAAGACGCCGCAGTTTGTCTCCTCG
genomic: CAGTCGCAGCCCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGgtgagatggt ... ctaaaagcagGAGTTACAGTCCCCGCGGGCGATCCCCAAGACGCCGCAGTTTGTCTCCTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACCTGGTCATTTTGCCCGTGAATGCCGTTTGCGTGGTGGTTCTGGAAGACGTCGCAGTCGCAGCCCTAGGTACCGCAGGAGCCCAAGTTATGGTCGTAGgtgagatggtttgaggaacatgttctatttttatcagttctattattgtggtttattggactggttgccagcctttttttccaaccccccacttccacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccac