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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAGCCACATTCAGTTCTGCCAATTGGTGTTGTTGCACTTGCTGACCTTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactctctacccttaatgcttatggccttatctgtttcatggacccttcctcacccttataacatgtgggaaaaaaaattatcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01940.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G21960.3 (Glycine max), 5'ss of exon 4
TTATGAGCCACATTCAGTTCTGCCAATTGGTGTTGTTGCACTTGCTGACCTTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactctctacccttaatgcttatggccttatctgtttcatggacccttcctca---cccttataacatgtgggaaaaaaaattatcag
|||||| |||||||||||| |||||||||| ||||||||| | ||||||   ||| ||||  |||||||  | ||||| ||||| ||||| || ||||| ||||| || |   |   |     || | |       | ||      |   ||    |     ||||| |||  ||  ||| |          
TTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAGCTGACAACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAGCAGTGCGgtaaggcttttatcgactctgttttgttgtgaaggttattgaggatataatttaaaaaatttcttattacacttgacaaatag---------

upper sequence: Vv04s0044g01940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G32790.1 (Glycine max), 5'ss of exon 4
TTATGAGCCACATTCAGTTCTGCCAATTGGTGTTGTTGCACTTGCTGACCTTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactctc---tacccttaatgcttatggcc-ttatctgtttcatggacccttcctcacccttataacatgtgggaaaaaaaattatcag
|||||| |||||||||||| |||||||||| ||||||||  | ||||||   ||||||||  |||||||  | ||||| ||||| ||||| || ||||| ||||| || |    |||||||  |  | |||    ||||       ||          |    ||| |  ||  |   ||| |          
TTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCGTTAGCTGACAACACAGGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAGCAGTGCGgtaaggcttttatatacccttttttgtaatgaaggttattgaggatataatttaaaaatt-ttcttctcgcacttaacaaatag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719781|gb|EE095207.1|EE095207
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|351031411|gb|FQ445436.1|FQ445436
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTTGGTTTGGGTCTTA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTT-GGTT-GGGTCTTA
EST: gi|349830416|gb|FQ420676.1|FQ420676
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|110410772|gb|EC976464.1|EC976464
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|110366687|gb|EC930603.1|EC930603
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         TTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|110718650|gb|EE095723.1|EE095723
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCC                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|110405821|gb|EC971375.1|EC971375
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|349810065|gb|FQ401511.1|FQ401511
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCCAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTC
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTC
EST: gi|349810606|gb|FQ402849.1|FQ402849
EST:     TTACAGGTTTCCTGCCTCTCTCANAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|30131047|gb|CB916386.1|CB916386
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|156739053|gb|EV243166.1|EV243166
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCT                         GTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATATATGGACTTGGTTGGGTCTTACA
EST: gi|110719222|gb|EE096951.1|EE096951
EST:     TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAATGCT                         GTGTTCTACGTGCCATTCCTGCGGCATAT
genomic: TTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGTAGTGCTgtaagactct ... aaattatcagGTGTTCTACGTGCCATTCCTGCGGCATAT