Sequence
atgc intronic sequence ATGC exonic sequenceAATTATCATCCCTGCAGTATGCAGAGAGAAAGGCAGCCCATTTGGAGCACCTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCGgtatggtatctaattggcttcatctggttctgattctgattctgagaccaccaaactaaatataattgatttgaattgttggctttttttgggcatattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G32810.1 (Glycine max), 5'ss of exon 4
AATTATCATCCCTGCAGTATGCAGAGAGAAAGGCAGCCCATTTGGAGCACCTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCGgtatggtatctaattggcttcatct----ggttctgattctg-attctgagaccaccaaactaaatataattgatttgaattgttggctttttttgggcatattg
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GATCATTATTGCAGCTATATGTAAACAGGAAGGCAGCCCTTTTGGAGAACCTGATCTCTGCAATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGgtatggaacatgttaattttgaagttgcaagtgctgatatagtgtgcagtgtgcgctttac-acacgaaaacaataagcttaagagaattttcatggtacc----
upper sequence: Vv04s0044g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G36030.2 (Glycine max), 5'ss of exon 4
AATTATCATCCCTGCAGTATGCAGAGAGAAAGGCAGCCCATTTGGAGCACCTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCGgtatggtatctaattggcttcatctggttctgattctgattctgagaccaccaaactaaatataattgatttgaattgttggctttttttgggcatattg-------------------------------------------------------
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AATCATTATCCCGGCTATATGTAAAGACAAAGGTAGTCCTTTTGGAGACTCCAATGTCTGCTATCAATATGGAATGGCTTATGCTTCACTTTCTATGGCGgtttgtaacttcatcagcttcttttagat-taattcttaacttacaataatgggtataaatgtgaagttttccaaccaaaaactgaaaataatgaaaacgtttatttggctatatatttttgttttctgaagtggtattcatttgtaaactgtag
upper sequence: Vv04s0044g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G09390.2 (Glycine max), 5'ss of exon 5
AATTATCATCCCTGCAGTATGCAGAGAGAAAGGCAGCCCATTTGGAGCACCTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCGgtatggtatctaattggcttcatctggttctgattctgattctgagaccaccaaactaaatataattgatttgaattgttggcttt---ttttgggcatattg---------------------------------------------------------------
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AATCATTATCCCGGCTATATGTAAAGACAAAGGTAGTCCTTTTGGAGACTCCAATGTCTGCTATCAATATGGAATGGCTTATGCTTCACTTTCTATGGCGgtttgtaacttcatcagctac-tttcatattaattcttaacttacaataatgggtataaatgtgaagttttccaaccaaaaactataaataatggaaacgtttttcttttttgctatatttgtttcccttttgttttctgaagtggtatccattggtaaattgtag
upper sequence: Vv04s0044g01870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G21930.1 (Glycine max), 5'ss of exon 4
AATTATCATCCCTGCAGTATGCAGAGAGAAAGGCAGCCCATTTGGAGCACCTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCGgtatggtatctaatt----ggcttcatctggttctgattctgatt--ctgagaccaccaaactaaatataattgatttgaattgttggctttttttgggcatattg
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AGTCATTATTCCAGCTATATGTAAAGAGAGTGGCAATCCTTTTGGAGACTCTGATGTCTGCTATCAATATGGGATGGCTTATGCTGCACTTTCTATGGCGgtatgatgtttaactttgaagttgcaagtgcatatagtgtgcacttacacaagaaaataatttggctaaaatacttttaaatccataattttagttttct------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188253|gb|CF607602.1|CF607602EST: CTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCG ATTGGAGCTATTTGCTTGTGGTCTTATGTTTACAACATT
genomic: CTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCGgtatggtatc ... gatattgcagATTGGAGCTATTTGCTTGTGGTCTTATGTTTACAACATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTATCATCCCTGCAGTATGCAGAGAGAAAGGCAGCCCATTTGGAGCACCTGATGTTTGCCATACATTTGCAATGGCTTATGCTTCACTTTCTATGGCGgtatggtatctaattggcttcatctggttctgattctgattctgagaccaccaaactaaatataattgatttgaattgttggctttttttgggcatattg
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