Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagctactctcctaatgtttaaaaaagttagggttcatgcatctactcacccatgcatgagtgcacacacatgaatgctatccttttcccgacatgcaatctctttccaatctgttcattccaagtgagtggacggtgtatttgaccctgttcttgtaacattctggattgtcatgttgtcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01290.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G39110.1 (Glycine max), 5'ss of exon 4
GAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagctactctcctaatgtttaaaaaagttagggttcatgcatctactcacccatgcatgagtgcacacacatgaatgctatccttttcccgacatgcaatctctttccaatctgttcattccaagtgagtggacggtgtatttgaccctgttcttgtaacattctggattgtcatgttgtcag
|||||  |||| |||||||| |||||||||||||| ||||||||||||||||| |||||  ||||||| ||||       ||| ||  |    |||  |  || || ||     ||   ||  |  |      |    ||||||  || | |||    | ||  |     | | | || | | ||                                                                 
GAGATCCATTTGCTCAGTCAGCTTTCACATCCAAACATCGTTCAATACTATGGGAGTGATTTGgtatg-gctaa------aatattccat---gttctgaatcctgtatgc---catttatatacaaaaaataattgttgaatgagattcatttatgaatatata-----tgtgccatgtttgcag----------------------------------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G16670.3 (Glycine max), 5'ss of exon 4
GAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagctactctcctaatgtttaaaaaagttagggttcatgcatctactcacccatgcatgagtgcacacacatgaatgctatccttttcccgacatgcaatctctttccaatctgttcattccaagtgagtggacggtgtatttgaccctgttcttgtaacattctggattgtcatgttgtcag
||||||||||| || | ||| |||||||| |||||||| |||||||||||||| |||||| |||||||    | | | | || |||||||    ||      ||||  | |||  |   ||   || |||||||| ||  |  | |||                ||| ||  |  |   |||  ||  | | |   |  ||  ||| ||                                         
GAGATAAATTTGCTAAATCAGCTTTCACACCCAAATATTGTTCAATACTATGGGAGTGAACTGgtatgctagaatattcaaa-gtttaaatcgttttaa--ccatgtttatacctaat-atagctgtgtgcacactcaaaagaggtatt-----------gaagaatttccatt-atcatgtatataactaatatatataca-tgttttcag--------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G15870.1 (Glycine max), 5'ss of exon 5
GAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagctac-tctcctaatgtttaaaaaagttagggttcatgcatctactcacccatgcatgagtgcacacacatgaatgctatccttttcccgacatgcaatctctttccaatctgttcattccaagtgagtggacggtgtatttgaccctgttcttgtaacattctggattgtcatgttgtcag
|||||  |||| |||||||| |||||||||||||| || |||||||||||||| |||||  |||||||    |  | | | ||  | | ||    ||| |   |||  || |||  |   |   |  | ||   |   ||||     ||  |||     | |   | | | | | | || | | ||                                                                 
GAGATCCATTTGCTCAGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGATTTGgtatggctaaaatattccaagttctgaatccattatg--ccatttatatacaaaaaaaaaaaaaattgttga---atgagattcattatttcatttataaata-tatatgtgccatgtttgcag----------------------------------------------------------------

upper sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G32510.1 (Glycine max), 5'ss of exon 4
GAGATAAATTTACTCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagctactctcctaatgtttaaaaaagttagggttcatgcatctact-cacccatgcatgagtgcacacacatgaatgctatccttttcccgacatgcaatctctttccaatctgttcattccaagtgagtggacggtgtatttgaccctgttcttgtaacattctggattgtcatgttgtcag
||||||||||| || | ||| |||||||| || ||||| ||||||||| |||| |||||| |||||||  |||   |  ||   ||| ||            |||   |  |||   | ||  ||  || | |     |  | | | ||| |  |    | |   ||| | | |||| | | ||||                                                                 
GAGATAAATTTGCTAAATCAGCTTTCACACCCTAATATTGTTCAATACCATGGGAGTGAACTGgtatg--ctagaataataccattttaa-----------ccatattttaactgtgcacactcaaaagagaaattgaagaatttccatcatcatgtatataactaatatatatcca-tgttttcag----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698751|gb|EE076609.1|EE076609
EST:     TCAGTCAACTTTCACATCCAAATATCGTTCGATACTATGGTAGTGAAATG                         GGTGAAGAAACACTATCAGTTTATTTGGAGTATGTCTCTGGTGGCTCTATC
genomic: TCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagcta ... atgttgtcagGGTGAAGAAACACTATCAGTTTATTTGGAGTATGTCTCTGGTGGCTCTATC
EST: gi|161714297|gb|FC063543.1|FC063543
EST:     TCAGTCAACTTTCACATCCAA-TATCGTTCAATACTATGGTAGTGAAATG                         GGTGAAGAA-CACTATCAGTTTATT-GGAGTATGTCTCTGGTG-CTCTATC
genomic: TCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagcta ... atgttgtcagGGTGAAGAAACACTATCAGTTTATTTGGAGTATGTCTCTGGTGGCTCTATC
EST: gi|71863025|gb|DT012080.1|DT012080
EST:     TCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATG                         GGTGAAGAAACACTATCAGTTTATTTGGAGTATGTCTCTGGTGGCTCTATC
genomic: TCAGTCAACTTTCACATCCAAATATCGTTCAATACTATGGTAGTGAAATGgtatgagcta ... atgttgtcagGGTGAAGAAACACTATCAGTTTATTTGGAGTATGTCTCTGGTGGCTCTATC