Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag

Basic information

species Vitis vinifera
transcript Vv04s0043g00440.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g01060.1 (Oryza sativa), 5'ss of exon 3
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattc-tctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag
|||| ||||| ||  | |||  ||| || |||||||||||||| || ||||| ||| | || ||||| ||||| || || || ||||| ||||||||||||||||   |   |        ||  ||||  ||   |    |||||  | ||  || | | | |  | | |||| |                                                        
TCACCACTGGCGCCAGGGAGAGTGCCTTTAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGATGAGCTCATCAATGCCGCCAAGGGCTCATCCAACAGgtaaatcttgcttc-------tcatttgatgaaatgaggctactgacacatccatgctctaattctgatatgttacag------------------------------------------------------

upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag
                 |||   || ||||||||||||||||| || ||||| ||| | || || || || ||||| || || ||||| |||||||||||||| || | |   |     ||  |||||       | |||  | |||  |  | | || | |  |  |||||   ||| |   || | |                                          
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttg-----ctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag-----------------------------------------

upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g29190.2 (Oryza sativa), 5'ss of exon 3
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag
|||| ||||||||  | |||   || ||||||||||||||||| || ||||| ||| | || || || || ||||| || || ||||| |||||||||||||| || | |   |     ||  |||||       | |||  | |||  |  | | || | |  |  |||||   ||| |   || | |                                          
TCACCACTGGTGCCAGGGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttg-----ctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag-----------------------------------------

upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G26840.1 (Glycine max), 5'ss of exon 4
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgttttta-gtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag
| || || |||||||| ||  |||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| |   | ||     ||| ||  || | | | || ||    ||    | |   |||||  ||  ||| ||||   || | |      ||   |                                     
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCCGATGAACTTATTAATGCAGCCAAAGGTTCATCCAATAGgtatacttttgcaatcctat-tcatttaacatacatttttgtttgtcattttaaatttttttgttggttttgttgaataatatttctcaatttcag------------------------------------

upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag
| || || |||||||| ||  |||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||||||||||||||||| |      |||    | ||  ||      ||  || |     |   | |||| | | | |  | | | ||   | ||  ||| ||       | ||  ||||  |  | |||| ||            
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtata------ctttttaacattcct------attcatggtgtgtacattttctgatgtaattttgattttttttttgtt--ggtttt-------gctgaatgacattactgtatttcag-----------

upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 5'ss of exon 3
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttcc-ctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag
| ||||||||||| || |||||||| ||||||||||||||||| || || || |||||||| || ||| | ||||||||||| || || || |||||||||||||  ||   | ||| | | ||  |      |  ||| ||       ||  | | |||  |||   ||||| | ||  ||||| || |||| | ||||  ||  |||   |                   
TTACTACTGGTGCGCGAGAGTCTGCTTTCAGGAACATCAAGACCATTGCAGAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaa--atgcttgagaca-accttgttttgtctgaattacatatggcgtcattctgttt--tgatacctgttacacttctctggactgataaaaggttg-ttgcttgttccag------------------

upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgtt-ccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag
|||| ||||| || || |||||||| || || ||||||||||| || ||||| |||||||| |||||  | ||||||||||| |||||||| || ||||||||  |            |||  |   | ||| | |    || | | |   |||  ||  ||       ||||  ||||  ||  | || | |  ||| || | | | | || ||                 
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatga------------atagttacgggaaagtcttcgacatttacttgttct--ttggagcagaaattgttatcctaccct--ttttctgacttgt-gggtaattcttttttacag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71876249|gb|DT025304.1|DT025304
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|77586506|gb|DV222369.1|DV222369
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGAT
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGAT
EST: gi|77581200|gb|DV219528.1|DV219528
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71883088|gb|DT032143.1|DT032143
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71890464|gb|DT039519.1|DT039519
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAA
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAA
EST: gi|110422670|gb|EC988997.1|EC988997
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71867505|gb|DT016560.1|DT016560
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71867269|gb|DT016324.1|DT016324
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110688433|gb|EE066977.1|EE066977
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110418494|gb|EC984652.1|EC984652
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110375762|gb|EC940777.1|EC940777
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71867000|gb|DT016055.1|DT016055
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|30320718|gb|CD003980.1|CD003980
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|34319678|gb|CF372432.1|CF372432
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110690239|gb|EE067163.1|EE067163
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71867499|gb|DT016554.1|DT016554
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71875879|gb|DT024934.1|DT024934
EST:     GAATGCTTGGCCGATGAACTCATTAACGTAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71872036|gb|DT021091.1|DT021091
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71885640|gb|DT034695.1|DT034695
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71870766|gb|DT019821.1|DT019821
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71867409|gb|DT016464.1|DT016464
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCNAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|77580785|gb|DV219300.1|DV219300
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|30296085|gb|CB972879.1|CB972879
EST:     GGATCCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTCGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|161713004|gb|FC062426.1|FC062426
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110375233|gb|EC940198.1|EC940198
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110387551|gb|EC952229.1|EC952229
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110384661|gb|EC949115.1|EC949115
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110716285|gb|EE091135.1|EE091135
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|77577781|gb|DV217640.1|DV217640
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|351017700|gb|FQ436053.1|FQ436053
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACC
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAA-GGATGAGATTGAGCGAGTTGCCAAGGCTAACC
EST: gi|110726592|gb|EE102508.1|EE102508
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|32247513|gb|CD713332.1|CD713332
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCANAGGGTTCATCCAACAG                         CTACGCCATCAAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACC
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAA-GAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACC
EST: gi|71873340|gb|DT022395.1|DT022395
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|77588457|gb|DV223440.1|DV223440
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71873905|gb|DT022960.1|DT022960
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71874207|gb|DT023262.1|DT023262
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110388834|gb|EC953627.1|EC953627
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110414383|gb|EC980213.1|EC980213
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|18459303|gb|BM437581.1|BM437581
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|56408695|gb|CX016947.1|CX016947
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|161713745|gb|FC064335.1|FC064335
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110701573|gb|EE079297.1|EE079297
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71867097|gb|DT016152.1|DT016152
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110420725|gb|EC987005.1|EC987005
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|34415533|gb|CF414287.1|CF414287
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110360703|gb|EC924020.1|EC924020
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71875878|gb|DT024933.1|DT024933
EST:     GAATGCTTGGCCGATGAACTCATTAACGTAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110387825|gb|EC952523.1|EC952523
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|34320414|gb|CF373168.1|CF373168
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|110687256|gb|EE064507.1|EE064507
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71870686|gb|DT019741.1|DT019741
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|71872644|gb|DT021699.1|DT021699
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAGAAAGGATGAGATTGAGCGAGTTG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTG
EST: gi|77581790|gb|DV219850.1|DV219850
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTG
EST: gi|71873248|gb|DT022303.1|DT022303
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCANTCAAGAAAA-GGATGAGATTGAGCGAGTTGCCAAGGCTAACC
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCA-TCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACC
EST: gi|110689837|gb|EE066411.1|EE066411
EST:     GAATGCTTGGCCGATGAACTCATTAACGCGGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
EST: gi|34320737|gb|CF373491.1|CF373491
EST:     GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAG                         CTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG
genomic: GAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagata ... tatatctcagCTACGCCATCAAGAAAAAGGATGAGATTGAGCGAGTTGCCAAGGCTAACCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG