Sequence
atgc intronic sequence ATGC exonic sequenceTGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttattttgaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatct--gttattttgaac
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TGAGTTGGCATACTTGGAATGCATCCACTTGTTTGTCGAGATATTAGATCATTTCTTCAGCAATGTGTGTGAACTCGACTTAGTATTTAATTTCCACAAGgtaacagctatt-tctcaacaggctattcctgtatcagtatgacaattatgatactcatgatcca-attgcactcctttctcatgtttaagcagaagtgaaa
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G052713_T01 (Zea mays), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttattttgaac
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CGAATTGGCATACTTGGAATGTATCCATCTGTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAACTTGATTTAGTATTTAATTTCCACAAGgtaactttatgcttcactaggctaatctagcaatctgcaataattcaatactttttatcttttcacatcttgtatttaaactttaaagagcagtttccaa
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC195874.2_FGT002 (Zea mays), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttat----tttgaac-
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TGAATTGGCATACTTGGAATGCATTCACTTGTTTGTCGAGATATTGGACCATTTCTTTAGCAATGTTTGTGAGCTCGATTTAGTGTTTAATTTTCACAAGgtaca---gattctttcttttccttgttacc--ttataatattctttgcttgtagcacaattgtgatccatctttgggttttccatgaaacatacggtttgatta
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G40430.2 (Glycine max), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatgg--ttacttcttttttctggtt-ctgaattgtcctaattgaatgataaatggatat-tgcctacttat-ttcatatctgttattttgaac
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TGAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTTGATTTGGTTTTTAACTTCCACAAGgtttgt-taattgttaccttgttcctatcctgtgtttgtttgcttgttgtattttagcatcaaataatcatgtgattgttgatgttgatatctat-gtgcca---
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatggttacttcttttt-tctggttctgaattgtcct----aattgaatgataaatggatattgcctacttatttcatatctgttattttgaac
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-GAGTTGGCGTATTTAGAGTGCATCCATTTGTTTGTGGAAATATTGGATCACTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgt-taattctctcttcttgttcctataccgtgtttgtttgtttcttgcattttaccatcaaataatcatgggattgttgatgttgatgt-tgatgttga--
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G47830.1 (Arabidopsis thaliana), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtg-caattatggttacttcttttttctgg-------ttctg-aattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttattttgaac
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TGAGTTGGCTTACTTGGAGAGTATCCATTTGTTTGTGGAGATATTGGACCATTTCTTCAGCAATGTTTGTGAGCTAGATTTGGTGTTTAATTTCCACAAGgtacttaacctctttacttactcttatcctttgtaaatagcttctggaactgcttcgttggattcataactttaagttgtgatgctgtacaacaactggt---------
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S250_15V6.1 (Physcomitrella patens), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgtt--agtgcaattatggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttattttgaac-------------------------------------------------------------------------------
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CGAGCTGGCCTATCTTGAAAGCATTCATTTGTTTGTGGAGATATTGGACCATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAGgtttaattgcgtttcttctcttgacatttggaacatacgtcatcaagctttttgcacagtaacttacatctgttgacat-ctagatctccgt-attaagattcatggtggattgtaggatgcatgtcgaatgtttgtattgtggtggtgtgaaaataacgttttcatgctatggttgacag
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ09792 (Selaginella moellendorffii), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaatta-tggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttattttgaac
||| | || || | ||| ||||||| |||||||| ||||| | ||||||||||||||||| || || ||||||||| |||| || ||||| ||||||| ||| || | | | || || | | ||| | ||| | | | | ||| | | | |||
CGAGCTGGCCTACCTCGAGAGCATCCACCTCTTTGTGGAGATCCTAGACCATTTCTTCAGCAACGTTTGCGAGCTAGATCTGGTTTTCAACTTCCACAAGgccagtttctttccttgcttttttattctcccggtctggtgttgcaagcactcagcgcctgctgg-tttcgtttacag-----------------------
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ11600 (Selaginella moellendorffii), 5'ss of exon 4
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaatta-tggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttattttgaac
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CGAGCTGGCCTACCTCGAGAGCATCTACCTCTTTGTGGAGATCCTAGACCACTTCTTCAGCAACGTTTGCGAGCTAGATCTGGTTTTCAACTTCCACAAGgccagtttctttccttgcttttttattctcccggtctggtgttgcaagcactcagcgcctgccgg-tttcgtttacag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389725|gb|EC954585.1|EC954585EST: ATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAG GTATATCTAATACTTGATGAATTCATTCTTGCTGGAGAGCTCCAGGAAACA
genomic: ATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaa ... ttgcatatagGTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGgttagtgcaattatggttacttcttttttctggttctgaattgtcctaattgaatgataaatggatattgcctacttatttcatatctgttattttgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga