Sequence
atgc intronic sequence ATGC exonic sequenceTCACCATAGGGAGATAGCAATCTCAATAAGCAATTATACCCTGAAGCATGGCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATgtatgttctctttcttagtatcttttattgccatttgggtgatagatatatgatatcctaataagattgtaaaacaattgttccttgaagttcgtgtggaaaatttgcatatctctaaataatgtgcaaaaaatgtccagtcccttgtaaatgcagatatatatattttttactgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G07720.1 (Glycine max), 5'ss of exon 4
TCACCATAGGGAGATAGCAATCTCAATAAGCAATTATACCCTGAAGCATGGCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATgtatgt-----tctctttcttagtatcttttattgccatttggg--tgatagatatatgatatccta-ataagattgtaaaacaattgttccttgaagttcgtgtggaaaatttgcatatctctaaataatgtgcaaaaaatgtccagtcccttgtaaatgcagatatatatattttttactgtttcag
|||||||||||| | |||||||| |||||||||||||| || |||||||| ||| |||||||| ||||||| || || || |||||||||| |||||||||||| | || | | || || | || ||| || || ||| ||||| | | || |||| | ||| | |
TCACCATAGGGAAGTTGCAATCTCTATAAGCAATTATACTCTAAAGCATGGAGATACAGGATTGATAATTGTCGGTGGCAGAATGGAAATGCAGCCACATgtatgtgtcactttccccccttgtttcctggtttattattcaaatttgctacgtatgcctcttcctatgtgctaatggaaaa-agttgcaatatataccct----------------------------------------------------------------------------------------
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G37580.1 (Glycine max), 5'ss of exon 4
TCACCATAGGGAGATAGCAATCTCAATAAGCAATTATACCCTGAAGCATGGCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATgtatgttctctttcttagtatcttttattgccatttgggtgatagatatatgatatcctaataagattgtaaaacaattgttccttgaagttcgtgtggaaaatttgca-tatctctaaataatgtgcaaaaaatgtccagtcccttgtaaatgcagatatatatattttttactgtttcag
|||||||||||| | |||||||| |||||||||||||| || |||||||| ||| ||||||| ||||||| || || ||||||||||||| ||||||||||| ||| | || || || ||| | || ||| ||| | || ||| | ||||| | | || | |||| ||||| ||| | |
TCACCATAGGGAAGTTGCAATCTCTATAAGCAATTATACTCTAAAGCATGGAGATACAGGATTAATAATTGTCGGTGGCAGGATGGAAATGCAGCCACATgtatgagtcacttccc-----cccttgtttcc---tggtttat-----tattctattttgctacatatgt-------ctcttcctatgtgctaatg-gcaaaacttgcaatatataccctt-------------------------------------------------------------
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 4
TCACCATAGGGAGATAGCAATCTCAATAAGCAATTATACCCTGAAGCATGGCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATgtatgttctctttcttagtatcttttattgccatttgggtgatagatatatgatatcctaataagattgtaaaacaattgttccttgaagttcgtgtggaaaatttgcatatctctaaataatgtgcaaaaaatgtccagtcccttgtaaatgcagatatatatattttttactgtttcag
|||||||| ||||||||||| || ||||||||||| || |||||||||| ||| | || ||||| |||||||| || ||||||| |||| ||| |||||||| || || ||| | | | | | || ||| ||| || || || ||| ||| || ||
ACACCATAGAGAGATAGCAATTTCGATAAGCAATTACACATTGAAGCATGGTGATACGGGTTTGGTTATTGTTGGTGGACGGATGGAGATGCAGCCATATgtatgt----------aggatgaaaaattcctctgttgatttcctatgtat--cttccatatg---ttaccaatagattattcttttcgttttag--------------------------------------------------------------------------------------
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S11_162V6.1 (Physcomitrella patens), 5'ss of exon 4
TCACCATAGGGAGATAGCAATCTCAATAAGCAATTATACCCTGAAGCATGGCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATgtatgttctctttcttagtatct-tttattgccatttgggtgatagatatatgatatcctaataagattgtaaaacaattgttccttgaagttcgtgtggaaaatttgcatatctctaaataatgtgcaaaaaatgtccagtcccttgtaaatgcagatatatatattttttactgtttcag
|||||| | || |||| || |||||||||||||||||| |||||||||| || | ||| | || ||||| ||||| || ||||| | | || || ||| ||| | || | | ||||| || | | | | | | | | || | | || ||| | |||| | | | | || || ||| | || | ||| || | || |
TCACCACAAAGAAGTAGCCATTTCAATAAGCAATTATACCTTGAAGCATGGAGACACCGGACTAGTCATTGTGGGGGGAAGTATGGAGGTTCAGCCTCAGgtaccatctttcaatttgagttcatttatgatcaatcaa-catcttgtccagcttttacgtactacatgatgcagaaactgtggc----agttagagagtgttactt-cactactcctcgtcatattactaaattgcaagcttggacgttag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352767961|gb|FQ466170.1|FQ466170EST: GCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACAT ATTTACATGGATCCTTTTGAAGTCATTGGGATGACAGAGAAAAATGCAGAG
genomic: GCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATgtatgttctc ... actgtttcagATTTACATGGATCCTTTTGAAGTCATTGGGATGACAGAGAAAAATGCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACCATAGGGAGATAGCAATCTCAATAAGCAATTATACCCTGAAGCATGGCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATgtatgttctctttcttagtatcttttattgccatttgggtgatagatatatgatatcctaataagattgtaaaacaattgttccttgaagttcgtgtggaaaatttgcatatctctaaataatgtgcaaaaaatgtccagtcccttgtaaatgcagatatatatattttttactgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA