1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATAGATTCAAAGAACTTTGAGATTGCTCGGTTATGGGACCGATTGCATTATTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttctgcactgtctttttttttttttttaattattatcaaatttttatttctcttatttacctcaaaccatgtgtttaaactttctgaaatttt...
species | Vitis vinifera |
transcript | Vv04s0023g02110.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTATGATGCTGTGAACCGGGAGATGTTTCAGAGGAACCAAGAAGGTTTAG AGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTEST: gi|45771118|gb|CN006970.1|CN006970
genomic: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttc ... ttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
EST: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAG AGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTEST: gi|46919128|gb|CN548457.1|CN548457
genomic: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttc ... ttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
EST: TTATGATGCTGTGAACCGGGAGATGTTTCAGAGGAACCAAGAAGGTTTAG AGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
genomic: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttc ... ttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGATTCAAAGAACTTTGAGATTGCTCGGTTATGGGACCGATTGCATTATTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttctgcactgtctttttttttttttttaattattatcaaatttttatttctcttatttacctcaaaccatgtgtttaaactttctgaaatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG