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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcatttgacataccatcttaccacaatcatgatacattacatcttttttatttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtag

Basic information

species Vitis vinifera
transcript Vv04s0023g02050.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g47600.2 (Oryza sativa), 5'ss of exon 5
TGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcatttgacatac-catcttaccacaatcatgatacattacatcttttttat-ttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtag
||||||||||||||| |||||||| ||||| |||||||||||||| || || ||  | ||||| ||| | || || ||||| |||||  | || |||||||||       | ||  |     | ||     ||  |  ||| |  |    | | | |  ||   |  ||   |||  | | |                          
TGTTCTTTACTCATCTGTTGTTTACCCACACAACTATGGTTTCATTCCACGCACACTTTGTGAGGACGGTGACCCCATGGACGTCCTCGTCCTGATGCAGgtaac--tgatggatgtgtgtgtgttttttaaaagaaaatatacaaaccttctctaacattgcttctttttctctcctgatag-------------------------

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G046587_T03 (Zea mays), 5'ss of exon 2
TGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcatttgacataccatcttaccacaatcatgatacattacatcttttttatttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtag
||||||||| || || |||||||| |||||||||||||| ||||| || || ||  ||||||| || | ||| ||  |||||||||| || || ||||||||| | | || |   || |    || |   |  | |     || |  | | || ||   || |       | || |  ||                          
TGTTCTTTATTCCTCTGTTGTTTACCCACATAACTATGGCTTCATTCCACGCACACTCTGTGAGGATAACGACCCCCTGGATGTCCTCATACTGATGCAGgtattttaatgt---atgcagcgtttcggtagccttttattatcagctttattctaacattgtgtgctctttttctggaag-------------------------

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G37790.1 (Glycine max), 5'ss of exon 5
TGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcatttgacataccatcttaccacaatcatgatacattacatcttttttatttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtag
| ||||||||||||||||||| || ||||| ||||||||||| |||||  ||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||       || | ||      ||   | | | | || | |  |  | | |||         | || ||   ||| ||||||      || |  ||     |   
TATTCTTTACTCATCAGTTGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGgtaccaatgcttaaaattgttgtttctgatacttaagagaaa--atgtttgtttccagccaaaatttcaactgtattaaaatttgaacttttgttctgagaag---

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G07530.1 (Glycine max), 5'ss of exon 5
TGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcatttgacataccatcttaccacaatcatgatacattacatcttttttatttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtag
| |||||||||||||||| || || ||||| ||||||||||| |||||  ||||||| ||||||||||| ||||||||||| || ||| |||||||||||||||      || | | |  ||  |  |  |      |   |  |  | | |||         | || ||   ||| |||||   | || |     ||| | | ||
TATTCTTTACTCATCAGTAGTCTACCCACACAACTATGGTTTTATCCCAAGAACCATTTGTGAAGACAGTGATCCTATGGACGTGCTGGTTCTAATGCAGgtagcaatgcttaaaaaattattgtttctgatgttgaaccgaaaatgtttgtttccagccaaaatttcaactgtattaaaat--gtgaacttttattct-gagaag

upper sequence: Vv04s0023g02050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G18230.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcatttgacataccatcttaccacaatcatgatacattacatcttttttatttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtag
 ||||| ||||||||  |||| || || || ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| | || ||||||||  | ||  | | |    ||||||| |    ||||| |     | |  |  | ||       | | ||||   | | |  |     ||    |  |   |     
CGTTCTCTACTCATCCATTGTGTACCCCCACAACTACGGTTTCATCCCTCGAACTATCTGTGAAGACAGTGATCCAATGGATGTCCTGGTACTGATGCAGgtgctttctctcgcc---tcatcttagctt--tcatgttcatacaaacttgatgtaaacaggcagtgaaata--acagacttgagataaaatactgtgcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408581|gb|EC974217.1|EC974217
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27584281|gb|CB006976.1|CB006976
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30137621|gb|CB922959.1|CB922959
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110725005|gb|EE101327.1|EE101327
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110714201|gb|EE090834.1|EE090834
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110411150|gb|EC976854.1|EC976854
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110395524|gb|EC961190.1|EC961190
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110383428|gb|EC947801.1|EC947801
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110421372|gb|EC987668.1|EC987668
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|71883819|gb|DT032874.1|DT032874
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|32460779|gb|CD801953.1|CD801953
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30130758|gb|CB916097.1|CB916097
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110392954|gb|EC957638.1|EC957638
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30126419|gb|CB911758.1|CB911758
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27582989|gb|CB005684.1|CB005684
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110716413|gb|EE091375.1|EE091375
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30130907|gb|CB916246.1|CB916246
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30130760|gb|CB916099.1|CB916099
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110396411|gb|EC962096.1|EC962096
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|71889039|gb|DT038094.1|DT038094
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110729884|gb|EE106328.1|EE106328
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30137252|gb|CB922590.1|CB922590
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110377712|gb|EC942793.1|EC942793
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110395846|gb|EC961519.1|EC961519
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27586186|gb|CB008881.1|CB008881
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110687657|gb|EE065313.1|EE065313
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110686674|gb|EE064578.1|EE064578
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|351029910|gb|FQ427750.1|FQ427750
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110421893|gb|EC988197.1|EC988197
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27584608|gb|CB007303.1|CB007303
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|18458436|gb|BM436714.1|BM436714
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|349829323|gb|FQ419855.1|FQ419855
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCCTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110370067|gb|EC934244.1|EC934244
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110401433|gb|EC968043.1|EC968043
EST:     CAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: CAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110716422|gb|EE091391.1|EE091391
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|22012437|gb|BQ797471.1|BQ797471
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27584381|gb|CB007076.1|CB007076
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|349830764|gb|FQ417062.1|FQ417062
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110393667|gb|EC959071.1|EC959071
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|71887667|gb|DT036722.1|DT036722
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27582969|gb|CB005664.1|CB005664
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27582243|gb|CB004938.1|CB004938
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|27586396|gb|CB009091.1|CB009091
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|18458205|gb|BM436483.1|BM436483
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|71866481|gb|DT015536.1|DT015536
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110728877|gb|EE104831.1|EE104831
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110385769|gb|EC950321.1|EC950321
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110695196|gb|EE072933.1|EE072933
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|22015144|gb|BQ800178.1|BQ800178
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110393379|gb|EC958573.1|EC958573
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30126554|gb|CB911893.1|CB911893
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110385050|gb|EC949535.1|EC949535
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30135495|gb|CB920833.1|CB920833
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110423715|gb|EC990066.1|EC990066
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110395733|gb|EC961404.1|EC961404
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30135932|gb|CB921270.1|CB921270
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110405584|gb|EC971127.1|EC971127
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|37183453|gb|CF602807.1|CF602807
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110697619|gb|EE074766.1|EE074766
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30132904|gb|CB918243.1|CB918243
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110415749|gb|EC981681.1|EC981681
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|32459164|gb|CD800338.1|CD800338
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAACCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110411133|gb|EC976835.1|EC976835
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110722998|gb|EE099804.1|EE099804
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAA                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30137253|gb|CB922591.1|CB922591
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110393789|gb|EC959280.1|EC959280
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|349833327|gb|FQ416705.1|FQ416705
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|351025456|gb|FQ435148.1|FQ435148
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110418356|gb|EC984503.1|EC984503
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|351018517|gb|FQ424624.1|FQ424624
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30125675|gb|CB911014.1|CB911014
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|110715188|gb|EE092949.1|EE092949
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAG                         GAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG
EST: gi|30128077|gb|CB913416.1|CB913416
EST:     GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTGATGCAG                         GAGCCGGTTTTGCCTGGTTCTTTTCTTCGTGCTCGTGCAATTGGATTAATG
genomic: GAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcat ... tctcgtgtagGAGCCGGTACTGCCTGGTTCTTTTCTTCGTGCTCGTGCGATTGGATTAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTCTTTACTCATCAGTTGTTTATCCACATAACTATGGTTTCATCCCTCGAACCATCTGTGAAGACAGCGATCCTATGGATGTCCTGATTCTAATGCAGgtagtgtcatttgacataccatcttaccacaatcatgatacattacatcttttttatttttctaattaaatcttataaaaattcatcaattcgccctctcgtgtag

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