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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccaccattgttttcttagcaactcacaaattttaaactagtggttggaaccatatctgatattattgttttcttctttgattgcttcaatgctc...

Basic information

species Vitis vinifera
transcript Vv04s0023g01940.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G06190.3 (Glycine max), 5'ss of exon 5
GAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccaccattgtttt--cttagcaactcacaaattt-taaactagtggttggaaccatatctgatattattgttttcttctttgattgcttcaatgctc
||||| ||||| |||||||| || ||||||||||| ||||||||  ||||| ||||||||  ||||||| ||||||| ||   || |||    || ||||      ||||| |    |    |||    |    | |||| ||  | | || | |||  |||| | |  ||   
GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGgtaagtacagtgttctttctgttttgcaatctgagaatttgtttgttgactgttctgccatcgtgtgattttggtctcttttgctt-aattg-tgctctgtc-

upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G21840.1 (Glycine max), 5'ss of exon 2
GAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccaccattgttttc--ttagcaactcacaaattt-taaactagtggttggaaccatatctgatattattgttttcttctttgat-tgcttcaatgctc-------------------------------------------------------------------------
||||| |||||||||||||| || ||||||||||| ||||||||  ||||| | ||||||  ||||||| ||||||| ||   || |||    || | ||      ||||| |  | |  | |||    |  | | |||| ||  | | |  | |||   | ||||    |  |                                                                          
GAGATTAAGACTGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTTTCTGGAGTTGATCCTAGgtaagtacaatgttctttctgttttgtaatctgagaatttgtttattgattgttctgccattgtgtgattttgctctctgttgcttaattatgctctgtttgtagctaattgtggattgtgtttgtttttaatgggagaaactacaataacaatagtttattgtagggaatgtgaag

upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G06190.2 (Glycine max), 5'ss of exon 5
GAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccaccattgtttt--cttagcaactcacaaattt-taaactagtggttggaaccatatctgatattattgttttcttctttgattgcttcaatgctc
         || |||||||| || ||||||||||| ||||||||  ||||| ||||||||  ||||||| ||||||| ||   || |||    || ||||      ||||| |    |    |||    |    | |||| ||  | | || | |||  |||| | |  ||   
---------ACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGgtaagtacagtgttctttctgttttgcaatctgagaatttgtttgttgactgttctgccatcgtgtgattttggtctcttttgctt-aattg-tgctctgtc-

upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G08170.1 (Glycine max), 5'ss of exon 2
GAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccaccattgttttcttagcaactcacaaattttaaactagtggttggaaccatatctgatattattgttttcttctttgattgcttcaatgctc
||||| ||||| |||||||| || ||||||||||| ||||||||  ||||| | ||||||  ||||||| ||||||| ||   || |||   || | |                                                                         
GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTgtctggagctgatcctaggtaagtacagtgttctttctgtatccag------------------------------------------------------------------------

upper sequence: Vv04s0023g01940.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G25220.1 (Glycine max), 5'ss of exon 4
GAGATAAAGACTGTGGAACTTGTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccaccattgttttct---tagcaa-ctcacaaatt-ttaaactagtggttggaaccat-atctgatattattgttttcttctttgat-tgcttcaatgctc
||||| ||||| |||||||| || ||||||||||| ||||||||  | ||| | ||||||  ||||||| |||||||      || ||||||   | |||| || | ||||| || |  | ||   |    ||||  | |||| ||  | | || || ||   | ||||         
GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAGgtaagtagtgtttttttttctgttttgcaatctgagaaattgtttatttggtctcttctgccatcgtgtgattttggtctcttttttttaattgtgctct-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30126730|gb|CB912069.1|CB912069
EST:     GGTTGGGTTTACATATCCTTATCCGGAAATGATCCTCG                         GGAAACTTTTGTGAACACTTTTATGTTGCAAATTGCTATATTGTCAAATCA
genomic: GGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccac ... tatttggcagGGAAACTTTTGTGAACACTTTTATGTTGCAAATTGCTATATTGTCAAATCA
EST: gi|83274535|gb|DV938632.1|DV938632
EST:     GTCAAGCCAACTGGTTGGGTTTACATATCCTTATCCGGAAATGATCCTCG                         GGAAACTTTTGTGAACACTTTTATGTTGCAAATTGCTATATTGTCAAATCA
genomic: GTCAAGCCAACTGGTTGGGTTTACATATCCCTATCTGGAAATGATCCTCGgtaagtccac ... tatttggcagGGAAACTTTTGTGAACACTTTTATGTTGCAAATTGCTATATTGTCAAATCA