Sequence
atgc intronic sequence ATGC exonic sequenceATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttggataaatgtgtttatttttttttaataatgatgcaaaaatagaaatatttttgtcaattctttgattttttttccctccttttcttttaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G704053_T02 (Zea mays), 5'ss of exon 2
ATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttggataaatgtgtttatttttttttaataatgatgcaaaaatagaaatatttttgtcaat-tctttgattttttttccctccttttcttttaaat
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ATATCTTGAAGCCCGGAACTGGAATGTCACTAAGTCGAGAAAAATGCTTGAAGAAAGTCTCAAATGGAGGGCAACTTATAAGCCAGAGGATATTCGCTGGgtaaatgtgctcaagttactt-tgctctctgaatcctggt-caagtgaccaaacaccatgctaactgcctttcag--------------------------
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G443453_T01 (Zea mays), 5'ss of exon 5
ATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttggataaatgtgtttatttttttttaataatgatgca--aaaatagaaatatttttgtcaattct--ttgattttttttccctcctttt------cttttaaat
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ATATCTGGAAGCCCGTAACTGGAATGTTGCTAAGTCGAGAAAAATGCTGGAAGAAAGTCTCAAGTGGAGGGCAGCTTACAAGCCAGAGGATATTCGTTGGgtaaatt---------tgttcttccttttttgccatccatgcattgctctatttttgttcctctgaagcctagccaagtcactaaacatcatattaactgccttttag--
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G06380.1 (Glycine max), 5'ss of exon 3
ATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttgga--taaatgtgttt-atttttttttaataatgatgcaaaaatagaaatatttttgtcaattctt-tgattttttttccctccttttcttttaaat
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ATATTTAGAAGCAAGAAACTGGAATGTTGATAAAGCTAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGgttagtttgatttaactggctttgatccctacacactcaattggtgatgccaaaaatgaaattgataatgaacatgacatacttgtaaccttgatccatg----
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G25460.1 (Glycine max), 5'ss of exon 3
ATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttggataaa---tgtgtttatttttttttaataatgatgcaaaaatagaaatatttttgtcaattctttgattttttttccctccttttcttttaaat
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ATATTTAGAAGCAAGGAACTGGAATGTTGATAAAACCAAGAAAATGCTGGAGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGgttagtttgatttaacttgctttgatccctacatactcaattggtgatgccaaaaatgaaattgataatgaacatgccatacttgtaacattgatccatg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374991|gb|EC939941.1|EC939941EST: AAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATCCGTTGG CATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTT
genomic: AAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttgga ... ttcttaccagCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttggataaatgtgtttatttttttttaataatgatgcaaaaatagaaatatttttgtcaattctttgattttttttccctccttttcttttaaat
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcct