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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATTAAGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGgtgtgacatttattttcactagctatctcatttgccttatttcttatgttctttttcagactatgagttatgaagtgtagttatatttgtttggagcgtccataaattcttataaaatatgtgtttgtatgatctttttccccttttttattggttccag

Basic information

species Vitis vinifera
transcript Vv04s0023g01470.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877269|gb|DT026324.1|DT026324
EST:     AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAG                         GCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
genomic: AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGgtgtgacatt ... ttggttccagGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
EST: gi|110729959|gb|EE106491.1|EE106491
EST:     AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAG                         GCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
genomic: AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGgtgtgacatt ... ttggttccagGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
EST: gi|294965569|gb|GW837168.1|GW837168
EST:     AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAG                         GCATCTCGAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTAGGA
genomic: AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGgtgtgacatt ... ttggttccagGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
EST: gi|161719366|gb|FC068974.1|FC068974
EST:     AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAG                         GCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
genomic: AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGgtgtgacatt ... ttggttccagGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
EST: gi|110387686|gb|EC952373.1|EC952373
EST:     AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAG                         GCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
genomic: AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGgtgtgacatt ... ttggttccagGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
EST: gi|37186306|gb|CF605659.1|CF605659
EST:     AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAG                         GCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA
genomic: AGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGgtgtgacatt ... ttggttccagGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGA