1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGATGCACAATTTTTCAATCCCCTGTGCAGCAGCATGGGTTCAATTTCACATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgatgcactgctactctctcatttctcttgatcattgctcttgtgggtgaactcaaactttgaatttgacgtggtttgcattcatgatgttgtc...
species | Vitis vinifera |
transcript | Vv04s0023g01400.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|30256461|gb|CB972304.1|CB972304
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CGTATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|110689520|gb|EE065814.1|EE065814
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|30255134|gb|CB971581.1|CB971581
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CGTATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|110388710|gb|EC953488.1|EC953488
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|26262784|gb|CA813847.1|CA813847
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CAGGGCTGGTGATCTACCCAGTTCTGGTCAG G--TCCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|110374317|gb|EC939469.1|EC939469
genomic: CAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|110418567|gb|EC984727.1|EC984727
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGATEST: gi|349826006|gb|FQ415811.1|FQ415811
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
EST: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCCGTTCTGGTCAG GTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTEST: gi|26261618|gb|CA812681.1|CA812681
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATT
EST: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAG GTC--CACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
genomic: CATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgat ... atgtggccagGTATTCACAATTCCGGTTGCGCCAGGAGATGTCATTGTTGCTGGCACAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATGCACAATTTTTCAATCCCCTGTGCAGCAGCATGGGTTCAATTTCACATATCAACTGGAGAGCGGCAGGGCTGGTGATCTACCCAGTTCTGGTCAGgtcagttgatgcactgctactctctcatttctcttgatcattgctcttgtgggtgaactcaaactttgaatttgacgtggtttgcattcatgatgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc