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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCCAAGTCAACCAATTCATCGCACCCACGTCTTAAAAGCCCCATGGCAGGCACATTCTACCGAAGCCCAGGACCCAATGAACCGCCATTTGTGAAGgtgattcttctctagctagtgatttagttcaatcttaataatcatttcaggatgattggtataggccatttaatccagcagtacttttttattcagcttacatgaggacctttctcattttag

Basic information

species Vitis vinifera
transcript Vv04s0023g00760.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G38440.1 (Glycine max), 5'ss of exon 4
TGCTGCCAAGTCAACCAATTCATCGCACCCACGTCTTAAAAGCCCCATGGCAGGCACATTCTACCGAAGCCCAGGACCCAATGAACCGCCATTTGTGAAGgtgattcttctctagctagtgatttagttcaatcttaataatcatttcaggatgattggtataggccatttaatccagcagtacttttttattcagcttacatgaggacctttctcattttag
|||||  |||||| | || ||||| |  || | ||||||||||||||||||||| |||||||||||||| || | ||||  |||||| || |||||||||||   |||| ||||     | ||||  |    |  |   |   ||||  | |   ||  | |     |||   |||   ||                                          
TGCTGTGAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCCGGTGAACCTCCCTTTGTGAAGgtagatcttatctattgtataattttatatttttgtgtcatgaatttttgaaacctta-tgtgaagtattct-tcctttag------------------------------------------

upper sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G47880.1 (Glycine max), 5'ss of exon 4
TGCTGCCAAGTCAACCAATTCATCGCACCCACGTCTTAAAAGCCCCATGGCAGGCACATTCTACCGAAGCCCAGGACCCAATGAACCGCCATTTGTGAAGgtgattcttctctagctagtgatttagttcaatctta-ataatcatttcaggatgattggtataggccatttaatccagcagtacttttttattcagcttacatgaggacctttctcattttag
|||||  |||||| | || ||||| |  || | ||||||||||||||||||||| |||||||||||||| || | |||   ||||||  | |||||||||||   | || ||||     |  |||  | || | ||   | ||  |||   ||    |  |       |||   |||   ||                                          
TGCTGTGAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGgtacattttatctattatatagttt--tacatttttgtgtcatgcttttttgaaacctaatgcgaagtattct-tcctttag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386077|gb|EC950650.1|EC950650
EST:     CAGGCACATTCTACCGAAGCCCAGGACCCAATGAACCGCCATTTGTGAAG                         GTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATG
genomic: CAGGCACATTCTACCGAAGCCCAGGACCCAATGAACCGCCATTTGTGAAGgtgattcttc ... ctcattttagGTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATG