Sequence
atgc intronic sequence ATGC exonic sequenceTTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctctttactcatgttactggaattgatttgaatgtgccaaccatgttaggcttttcatttcccccagtttggattcaccaaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g21700.1 (Oryza sativa), 5'ss of exon 4
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctctttactcatgttactggaattgatttgaatgtgccaaccatgttaggcttttcatttccc---ccagtttggatt-caccaaatt-----------------
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GTGCAAGTTTGGTGCAACATGCAAGTTTCATCACCCCAGGGAGAAGGCTGCACTTGCAAACCGTGTACAGTTAAATGTTCTAGGCTACCCGATGCGTCCGgtttgttccataattctataatttagttgtcacctgatt--gcttaatcgtaatatctgttctctacctcttagcttgcatgcaagattagctttcattaacttgcagtttattactgcag
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G146514_T03 (Zea mays), 5'ss of exon 4
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctcttt--actcatgttactggaattgatttgaatgtgc-caaccatgttaggctttt------catttcccccagtttggattcaccaaatt-----------------
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GTGCAAGTTTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGgtttg-ttctgaatttctattacaattcacaatgtttca--tgatatgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcag
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G100794_T01 (Zea mays), 5'ss of exon 4
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctcttt--actcatgttactggaattgatttgaatgtgcca-accatgttaggctttt------catttcccccagtttggattcaccaaatt-----------------
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ATGCAAGTTTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGCTGAATGAACTGGGCTACCCACTCCGCCTGgtttg-ttctgaatttctattacaattcataatgtttca--cgatatgaatgcatagcatggtgccacatttttgtgcaacttttttgcaagatttgcgccgtttacttgaattttattactgcag
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G47660.1 (Glycine max), 5'ss of exon 4
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcg-attttttattt-ctctttactcatgttactggaattgatttgaatgtgccaaccatgttaggcttttcatttcccccagtttggat--tcaccaaatt-
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-TGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCTCTCCGCCCAGttagtattgaatatttacctcttatttatatc-taaatacagat---aaggcagtagttgtttgtcaatttgtggccattctagtttgattgcttgtttggttt
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G38650.2 (Glycine max), 5'ss of exon 4
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcg-attttttattt-ctctttactcatg--ttactggaattgatttg--aatgtgccaaccatgttaggcttttcatttc---ccccagtttggattcaccaaatt
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TTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCAgttagtattgaatatttacctcttgtttatagctaaatacagctgaggcagtagttttttgtcaatttgtggccatctagtttgattgcttgtttggttt---------
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G31370.2 (Glycine max), 5'ss of exon 3
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgatttt--ttatttctctttactca--tgttactggaattg-atttgaatgtgccaaccatgttaggcttttcatttcccccagtttggattcaccaaatt
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ATGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttagttattaatattttcccctcattcatttataattatgactacaatagtagttgctcataaatttgtggct--cattactgtatctttg--ttcatttgtt-
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G36140.1 (Glycine max), 5'ss of exon 4
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctctttactcatgttactggaattgatttgaatgtgccaacca-tgttaggcttttcatttcccccag--tttggattcaccaaatt
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GTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTgttag--tttttaatattttcctctcattcatttataattatgactacaatactagttgctcataaatttgtggctcattactgtatctttgttcatttggt-
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G02830.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctctttactcatgttactggaattgatttgaatgtgccaaccatgttaggcttttcatttcccccagtttggattcaccaaatt
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CTGCAAGTTTGGAGTAACATGTAAGTTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTATCCTCTACGCTCGgtat-atttgactttttgacttgctgatttcattacttctcatt--gtttcatcatcttagtgattctctgtaatgtcatatatgcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384276|gb|EC948703.1|EC948703EST: GAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCG GATGAGATTGACTGTGCTTATTATTTAAGAACTGGACAGTGCAAGTTTGGA
genomic: GAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgatttt ... tttcgtgtagGATGAGATTGACTGTGCTTATTATTTAAGAACTGGACAGTGCAAGTTTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctctttactcatgttactggaattgatttgaatgtgccaaccatgttaggcttttcatttcccccagtttggattcaccaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc