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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGAGAGGATATTCATACATAGAAGGTGTTGAAGGATTGCTTCGTGCTTTAAAACAAAACAACTATGAAATGCATGCTTTCACCAACTATCCTATATGgtaaaatgaaatataatttcttttgactacttcttgagaaaaagagtggtttttcattgttgggaaatttggttttctag

Basic information

species Vitis vinifera
transcript Vv04s0023g00160.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G47580.1 (Glycine max), 5'ss of exon 3
TGAGGAGAGGATATTCATACATAGAAGGTGTTGAAGGATTGCTTCGTGCTTTAAAACAAAACAACTATGAAATGCATGCTTTCACCAACTATCCTATATGgtaaaatgaaatataatttcttttgactacttcttgagaaaaagagtggtttttcattgttgggaaatttggttttctag-
 ||| || ||||||||||||||||||||  | |||   ||||||| | | ||||| | ||| |||||||| ||||||||||| || || ||||||||||||||| |       |  | | || ||| |  |  ||           |||  |   | ||     |  ||| || || ||| 
-GAGAAGTGGATATTCATACATAGAAGGCATCGAACAGTTGCTTCTTTCCTTAAAGCTAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGGtaagacagttatttttctattgtgatttgtgtttttcttttca--tggcatcctactg----aatgttttgtattgtagg

upper sequence: Vv04s0023g00160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G38750.1 (Glycine max), 5'ss of exon 3
TGAGGAGAGGATATTCATACATAGAAGGTGTTGAAGGATTGCTTCGTGCTTTAAAACAAAACAACTATGAAATGCATGCTTTCACCAACTATCCTATATGgtaaaatgaaatataatttcttttgactacttcttgagaaaaagagtggtttttcattgttgggaaatttggttttctag
|||| || |||||||| |||||||||||    |||   ||||||| | | ||||| ||||| |||||||| ||||||||||| || || ||||||||||||||| |       |  | | || ||| |  |  ||           |||  |   | ||     |  ||| || || |||
TGAGAAGTGGATATTCGTACATAGAAGGCAGCGAACAGTTGCTTCTTTCCTTAAAGCAAAATAACTATGAGATGCATGCTTTTACAAATTATCCTATATGgtaagacagttatttttctattgtgatttgtgtttttcttttca--tggcatcctactg----aattttttgtattgtag