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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcctgactgtgccagtaatgtcactttctatagcctgtatgaagtgttcactctaaatactactgtcttaaattatcctctgtacatgcag

Basic information

species Vitis vinifera
transcript Vv04s0008g07320.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g05630.1 (Oryza sativa), 5'ss of exon 3
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcctgactgtgccagtaatgt-cactttctatagcctgtatgaa-gtgttcactctaaatactactgtcttaaattatcct--ctgtacatgcag
| ||||| || |||||||| ||||||||||| || ||  ||||||| || ||||| || | |||||||||||||||   |||||  || || ||||| ||| ||          |    | ||||     | ||    |||    || |  ||   ||  |||||   |   ||  | | || ||    || | | |||||
GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAATTTAATTAAGCATCCAAAGTTCATCAGTGATATCAAGTCCGCTATCGgtatg----------gcattaataattcatgcattacggagcaaaaataattgtagccaacctaaaaggtg--gttgtgatttctctgtacttttcttgcag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G829894_T02 (Zea mays), 5'ss of exon 2
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcctgactgtgccagtaatgtcactttctatagcctgtatgaagtgttcactctaaatactactgtcttaaattatcctctgtacatgcag
|||||||||| |  ||||||||||| |||||||| ||  ||||||| || ||||| ||||  || |||||||||||  ||||||| ||  | ||||| |||   |||| |    |    | || |||    || |    | ||||    | | | |   | |     |    |||  |||||  |   | ||     
GTCATGGAGGAGTCCGAGCAGCTGAGTATGTTAAGCAGCACCTTTTCAGCAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCTGCTATCGgtac-tttcatattagcttaactattgtagacttttg--acttgtacactgagat-atggtgatcttgatacccttgtattatttttgctgcag----

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G12220.2 (Glycine max), 5'ss of exon 3
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgt---ttcctgactgtgccagtaatgtcact-ttctatagcctg------tatgaagtg-ttcactctaaatactactgtcttaaattatcctctgtacatgcag----------
| ||||| |||||||| || ||||| ||||| || |||||||| ||||| ||||||||||| |||||||| ||||||||||| || ||||| || |||||| |||   ||| |  || || || ||    ||   | |  |||||||      |   |  || |  |  |  |  |  ||| | ||      ||||    |  ||             
GCCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGgtgtgtaatttcttacctatgaca-tagcaccatgatcccttagcctgatgttctccaacttgataaatcccgagaataactattttttcccctcctgccaaactgtttttctccacag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 4
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtt---tcctgactgtgccagtaatgtcactttctatagc-ctgtatgaagtgttcactctaaatactactgtcttaaattatc----ctctgtacatgcag
||||||| |||||||| || ||||| ||||| ||  ||||||| ||||||||||||||||| || ||||| ||||||||||| || |||||||| ||| || ||||   ||||  ||||  |    |  ||  | | | |     | |  ||  || | | || ||| | ||   | ||    || |     | | |     |||
GTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgactcctacctgtcacttccagatccttatgtctgatgttctccgatttgctaaatccaaagaataactttttttcctaccaaaattttctttccacag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 3
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgt---ttgtttcctgactgtgccagtaatgtcactttctatagc-ctgtatgaagtgttcactctaaatactactgtctt-------aaattatcctctgtacatgcag
||||||| |||||||| || ||||| ||||| ||  ||||||| ||||||||||| ||||| || ||||| ||||||||||| || |||||||| ||| ||   |||| ||||  ||||       | |||  | | | |     | |   |  || | | || ||| | ||   | ||       ||||| | || |  |||     
GTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTAATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgtctcctacctgtcagttccaggtccttatatctgatgttctccaatttgctaaatccaaagaataacttttttcctgccaaatttttctttccacag----

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G33690.2 (Glycine max), 5'ss of exon 4
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgt---ttgtttcctgactgtgccagtaatgtcact-ttctatagcctg------tatgaagtg-ttcactctaaatactactgtcttaaattatcctctgtacatgcag----------
| ||||| |||||||| || || || ||||| || |||||||| ||||| ||||||||||| ||||| || ||||||||||| || ||||| || ||||||   |  ||||||| || ||  | ||   |||   | |  |||||||      |   |  || |  | ||| |  |  ||| | ||      ||||    |  ||             
GCCATGGTGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCATCCTAAATTCATTTCTGACACCAAATCTGCAATAGgtgcataatttcctgcctatgata-tagcatcatgatcccttagcctgatgttctccaacttgataaattctgagaataactattttttcccctcctgccaaactgtttttctccacag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttc----ctgactgtgccagtaatgtcactt--tctatagcctgtatgaagtgttcactctaaatactactgtcttaaattatcctctgtacatgcag
| ||||||||||| || |||||||||||||| || ||||| || || |||||  |||||||||||||||||||||| |||||||| | | | || ||||||   ||||     | |   ||  ||  |  | | |   |  |||| |      | |||   | |    |   |    | ||   |  |||||    ||     
GACATGGAGGTGCACGTGCAGCTGAATATGTGAAGCAAAATCTCTTCAGTAACCTGATCAGGCATCCAAAGTTCATCTCTGATACCACAGCTGCAATAGgtgcttttcacctttaatattgttagccagatgattcaataaatagacctagcaaggtgcctaattctgactttttcat-ttgcctgctcctcatctcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351037953|gb|FQ465191.1|FQ465191
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351015288|gb|FQ445572.1|FQ445572
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351049231|gb|FQ449953.1|FQ449953
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351042063|gb|FQ456273.1|FQ456273
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351012818|gb|FQ430381.1|FQ430381
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|352789850|gb|FQ478665.1|FQ478665
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCGGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351045009|gb|FQ449263.1|FQ449263
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351013013|gb|FQ433740.1|FQ433740
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351029309|gb|FQ436703.1|FQ436703
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349827540|gb|FQ422408.1|FQ422408
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349829612|gb|FQ421130.1|FQ421130
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|27580592|gb|CB003287.1|CB003287
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGGATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351027298|gb|FQ444547.1|FQ444547
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351045561|gb|FQ440746.1|FQ440746
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351027940|gb|FQ425841.1|FQ425841
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAAAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349821400|gb|FQ411021.1|FQ411021
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|352794348|gb|FQ481579.1|FQ481579
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351040277|gb|FQ425363.1|FQ425363
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351012750|gb|FQ430313.1|FQ430313
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351054667|gb|FQ456864.1|FQ456864
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349817052|gb|FQ399799.1|FQ399799
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351027358|gb|FQ444607.1|FQ444607
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349830755|gb|FQ417053.1|FQ417053
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351028368|gb|FQ427264.1|FQ427264
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351055478|gb|FQ442274.1|FQ442274
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349833265|gb|FQ416643.1|FQ416643
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|161707944|gb|FC055687.1|FC055687
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|110392949|gb|EC957627.1|EC957627
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|27580653|gb|CB003348.1|CB003348
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349830969|gb|FQ418253.1|FQ418253
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351012611|gb|FQ430175.1|FQ430175
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351056642|gb|FQ443269.1|FQ443269
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|352790958|gb|FQ479951.1|FQ479951
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351048943|gb|FQ449786.1|FQ449786
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|27579783|gb|CB002478.1|CB002478
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351026415|gb|FQ428427.1|FQ428427
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351032995|gb|FQ461884.1|FQ461884
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351045607|gb|FQ440792.1|FQ440792
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351055896|gb|FQ452361.1|FQ452361
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351040210|gb|FQ425296.1|FQ425296
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351053821|gb|FQ441587.1|FQ441587
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351041917|gb|FQ456127.1|FQ456127
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|352794319|gb|FQ481550.1|FQ481550
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351022909|gb|FQ428818.1|FQ428818
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|110702341|gb|EE080945.1|EE080945
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|352786293|gb|FQ478904.1|FQ478904
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|32249919|gb|CD715738.1|CD715738
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|349830841|gb|FQ418149.1|FQ418149
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351052370|gb|FQ455542.1|FQ455542
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|110357029|gb|EC920283.1|EC920283
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351014237|gb|FQ434826.1|FQ434826
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351041635|gb|FQ455845.1|FQ455845
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351012059|gb|FQ429865.1|FQ429865
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351038077|gb|FQ460819.1|FQ460819
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|352798552|gb|FQ480577.1|FQ480577
EST:     TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATCTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
EST: gi|351043128|gb|FQ451301.1|FQ451301
EST:     TAATTTGATCAGGCATCCATAGTTCATTTCTGATACAAAATCAGCTATAG                         CTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC
genomic: TAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcc ... gtacatgcagCTGATGCATACAAGCACACAGACTCAGAATTTCTGAAATCAGAAAATAATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgtttgtttcctgactgtgccagtaatgtcactttctatagcctgtatgaagtgttcactctaaatactactgtcttaaattatcctctgtacatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT