1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAATCTCCTCCTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGAgtaagtagattagctattagtaacaggaatctagttgttgccattgtgcatgcttttcatttgcttactttataattatatacag
species | Vitis vinifera |
transcript | Vv04s0008g06640.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCTTTATCAGCTTGGATATCATGTTGGTCTTAAAGCACAATATGCTGGA AACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGTCAAGEST: gi|110699448|gb|EE076454.1|EE076454
genomic: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGAgtaagtagat ... ttatatacagAACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGTCAAG
EST: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGA AACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGTCAAGEST: gi|110723814|gb|EE099106.1|EE099106
genomic: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGAgtaagtagat ... ttatatacagAACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGTCAAG
EST: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGA AACAAGGAAAAGAAGTATTTTATCCACAATCATTTGATATTTACCGTNCA-EST: gi|110700412|gb|EE078424.1|EE078424
genomic: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGAgtaagtagat ... ttatatacagAACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGT-CAA
EST: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGA AACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTGCCGTCAAGEST: gi|110699772|gb|EE077065.1|EE077065
genomic: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGAgtaagtagat ... ttatatacagAACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGTCAAG
EST: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGA AACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGTCAAG
genomic: CTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGAgtaagtagat ... ttatatacagAACAAGGAAGAGAAGTATTTTATCCACAATCATTTGATATTTACCGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACCTTCCTCTTGTTGTTCCCATAAGGAGGCTTGATCAAGAATCTCCTCCTCTTTATCAGCTTGGATATCATGTTGGGCTTAAAGCACAATATGCTGGAgtaagtagattagctattagtaacaggaatctagttgttgccattgtgcatgcttttcatttgcttactttataattatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA