Sequence
atgc intronic sequence ATGC exonic sequenceTCTTCCTCCGACAAGAAGCTTCTTGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATCTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAGgtcagttgagatattgaaatgttggtactgggtagtagtacatatcaaatgtttttagcatatctagtcatggttcaatggggtttcaccattcacatcg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 4
TCTTCCTCCGACAAGAAGCTTCTTGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATCTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAGgtcagttgagatattgaaatgttggtactgggtagtagtacatatcaaatgtttttagcatatctagtcatggttc-aatggggtttcaccattcacatcg--------------------------------------------------------------------------------------
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AGTTCTGACAAGAAGAAGCTCCTTGCTGTTATTGGAGTTTACACTGGTTTTGGTTCCCGGCTCAAGAGGAACACCTTCCGTGGCTCATGGATGCCGAGAGgttcgctgt--tcttgctcttttagtttccagt--ttacggcgataaaatgtgtgcgccctgataacatttggttggaatgcagcttcatttttttttctaatagctattgctgatgcaaactatgttacttataaggtttcaactacaggagtataattgttcttttacctcactgtaaatttcag
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G14000.2 (Glycine max), 5'ss of exon 4
TCTTCCTCCGACAAGAAGCTTCTTGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATCTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAGgtcagttgagatattgaaatgttggtactgggtagtagtacatatcaaatgtttttagcatatctagtcatggttcaatggggtttc--accattcacatcg---
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GGCTCTTCTGATCGTAGGCTTCTTGCTGTTATCGGAGTGTATACTGGATTTGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttcgattttggttattagaa--aagaaatactagttctcgtaaacttt-ggtgcacttga--gttgtttatttgcatttttggttatgaagaaagtgt
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G32180.1 (Glycine max), 5'ss of exon 4
TCTTCCTCCGACAAGAAGCTTCTTGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATCTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAGgtcagttgagatattgaaatgttggtactgggtagtagtacatatcaaatgtt-tttagcatatctagtcatggttcaatggggtttcaccattcacatcg
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AGCTCTTCCGATCCTAGGTTTCTTGCTGTTATTGGAGTGTATACTGGATTTGGAAGTAAATTGAAGAGAAATATTTTCAGGGGGTCTTGGATGCCCAGAGgtctgtttttgatttggttattagaaaagaaatactagttcttgtaaacttttatgcactcgatttgtttatttgcatttttggttatggagaaggcatg-
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTTCCTCCGACAAGAAGCTTCTTGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATCTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAGgtcagttga--gatattgaaatgt-tggt-actgggtagtagtacatatcaaatgtttt-tagcatat-ctagtcatggttcaatggggttt--caccattcacatcg
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TCTTCTTCAGGGAAGAAAATGCTAGCTGTTATTGGAGTTTACACAGGCTTTGGAAGTCACTTGAAGCGCAATAAATTTAGAGGCTCTTGGATGCCACGAGgtagaattatcacccctgctttgtatggtcatttaacaatgtttcattaaaaatatttggtacaatatattaagtattctcttatgaaatttacttctatttag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856228|gb|DT005283.1|DT005283EST: TGGTAGTCATTTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAG GTGAGGAAGCTTTNNNNNNNCTTGAGGAAAGAGGAGTGGTCATACGTTTCG
genomic: TGGTAGTCATCTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAGgtcagttgag ... gcttttgcagGTGAGGAAGCTTTAAAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTCCTCCGACAAGAAGCTTCTTGCTGTTATTGGAGTTTATACTGGATTTGGTAGTCATCTGAAGCGAAATGTGTTTAGAGGGTCTTGGATGCCAAGAGgtcagttgagatattgaaatgttggtactgggtagtagtacatatcaaatgtttttagcatatctagtcatggttcaatggggtttcaccattcacatcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa