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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACCTGCTATTGTTAAGTCTTTCTACGACAGAAGAATAGTGGGCTGCCCAGGTGGTGAGGGAGgtaagaccctcttttgtattcttttcttaattttgtcccttcaactaattctttcatgaatatgtttgatagtgtgataattaattgtcttatgttattgattataatttacag

Basic information

species Vitis vinifera
transcript Vv04s0008g05100.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g05100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC215864.3_FGT010 (Zea mays), 5'ss of exon 2
GAAGCACCTGCTATTGTTAAGTCTTTCTACGACAGAAGAATAGTGGGCTGCCCAGGTGGTGAGGGAGgtaagaccctcttttgtattcttttcttaattttgtcc-----cttcaactaattc--tttcatgaatatgtttgatagtgtgataattaattgtcttatgttattgattataatttacag
|| | |||  || | |||  ||| | |||  |||   | ||||| |||||||| |||||||||||||||||| |  | || | | |     |  || |||| ||         || ||  |    |   | | || ||| | |     || |   |  ||| |||   ||     || |   |  |||
GAGGAACCATCTGTAGTTGGGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAGgtaagccagtgttgtctctcgcccttatatttttttctaaagttaacagctggtgtggtgcgaagcatttgtgtaaccaattgcttggtttttgactttacttgcctgttttttctcgcag

upper sequence: Vv04s0008g05100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G064753_T01 (Zea mays), 5'ss of exon 4
GAAGCACCTGCTATTGTTAAGTCTTTCTACGACAGAAGAATAGTGGGCTGCCCAGGTGGTGAGGGAGgtaagaccctcttttgtattcttttcttaattttgtcccttcaactaatt-ctttcatgaatatgtttgatagtgtgat-aattaattgtcttatgttattgatta--taatttacag-----
|| | |||  || | ||| |||| | |||  |||   | ||||| |||||||| |||||||||||||||||| |  | || | |||     |  || |||| |  ||  |  |||   ||    ||           | |||| |  ||||  |||  || ||   ||  ||   |  |||         
GAGGAACCATCTGTAGTTGAGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAGgtaagccagtgttgtctatcgcccttatatttttttttctaaagttaacagctggtgtggtgcgaagcatttgtgtaaccaattgcttggtttttgcctttacttgcctgctttttctcccag

upper sequence: Vv04s0008g05100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G477366_T01 (Zea mays), 5'ss of exon 3
GAAGCACCTGCTATTGTTAAGTCTTTCTACGACAGAAGAATAGTGGGCTGCCCAGGTGGTGAGGGAGgtaagaccctcttttgtattcttttcttaattttgtcccttcaactaattctttcatgaatatgtttgatagtgtgataattaattgtcttatgttattgattataatttacag-------------
|| | |||  || | ||| |||| | |||  |||   | ||||| |||||||| ||||||||||||||||||  ||  | |||| |      ||||  ||| |  ||  |  |||   |||  ||    ||      | |    |||  |||||  |   ||| |||| | || ||  | |             
GAGGAACCATCTGTAGTTGAGTCCTACTATAACAAGCGGATAGTCGGCTGCCCTGGTGGTGAGGGAGgtaag--ccagtgttgtctctcgcccttatatttttttctaaagttaaca-tttggtgtg-gtgcgaagcatttgtgtaaccaattgcttg--gtttttgactttacttgcctgttttttctcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371298|gb|EC935203.1|EC935203
EST:     TAAGTCTTTCTACGACAGAAGAATAGTGGGCTGCCCAGGTGGTGAGGGAG                         AAGATGAGCATGATGTAGTGTGGTTTTGGTTGCACAAAGACCAACCACATG
genomic: TAAGTCTTTCTACGACAGAAGAATAGTGGGCTGCCCAGGTGGTGAGGGAGgtaagaccct ... taatttacagAAGATGAGCATGATGTAGTGTGGTTTTGGTTGCACAAAGACCAACCACATG