1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCATCCGCTGGATTTCTTCACAAACTGTGGTAAGATTAGATTCTATTGCTGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaattttacaaattggtgttgctagctcatttttttactaaattttttctgtcctgaacatgtatttgtatttaatatatttgacaatttgatgt...
species | Vitis vinifera |
transcript | Vv04s0008g05020.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110724001|gb|EE099447.1|EE099447
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110395970|gb|EC961644.1|EC961644
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110723317|gb|EE100491.1|EE100491
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110370561|gb|EC930011.1|EC930011
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110703623|gb|EE080641.1|EE080641
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110724830|gb|EE101011.1|EE101011
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110718100|gb|EE094549.1|EE094549
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|37184373|gb|CF603727.1|CF603727
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|29783439|gb|CB349598.2|CB349598
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCATGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110722837|gb|EE099459.1|EE099459
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110697462|gb|EE074469.1|EE074469
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|110399139|gb|EC965632.1|EC965632
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGACEST: gi|29782694|gb|CB348226.2|CB348226
genomic: TGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
EST: GAAGTTTGGTGGTCTTAGAGATGGATATTA CATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
genomic: GAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaatt ... taatgtgcagCATCCATGGGCAATGTGCCATTATCATGTTTGATGTTACTGCTCGCTTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATCCGCTGGATTTCTTCACAAACTGTGGTAAGATTAGATTCTATTGCTGGGACACTGCTGGGCAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTAgtaagtaattttacaaattggtgttgctagctcatttttttactaaattttttctgtcctgaacatgtatttgtatttaatatatttgacaatttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA