Sequence
atgc intronic sequence ATGC exonic sequenceCAATCAAGGTAGTTCGAAGCATAAGCAAGTACCGTGATGCAGCAATGGTTGAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCGgtacatatccactagattttctgctgaatggaaggttgacgctagttggctttatgccctgctctaatgtttatgaattttcttgctttctacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 3
CAATCAAGGTAGTTCGAAGCATAAGCAAGTACCGTGATGCAGCAATGGTTGAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCGgtaca-----tatccactagattttctgctgaa-tggaaggttgacgctagttggctttatgccctgctctaatgtttatgaattttcttgctttctacag
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CTATCAAGGTAGTTAGAAGCATACGGAAATATCGGGATGCAGCAATGCTCGAGATTGATGTGCTTCAACAACTAGCGAAGAATGATAGAGGAAGCTCGCGgtatggaacttatggagtaaaatgaatattaaaatttgtttttattgcttattgtaacaagggatggctaatatgtatttcatcatgcttataatttgcag
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G32660.1 (Arabidopsis thaliana), 5'ss of exon 4
CAATCAAGGTAGTTCGAAGCATAAGCAAGTACCGTGATGCAGCAATGGTTGAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCGgtacatatcca----ctagattttctgctgaatggaaggttgacgctagttggctttatgccctgctctaatgtttatgaattttcttgctttctacag
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CAATAAAGATAATTCGAAGCATTAAGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAGAAACTTGTTAAGAGTGATAAAGGCCGCACACGgtatttatttatcttctagacttta-gttgatgacatcgtttccttcag--aggtgtatatcattgctcagtttcttcatttctgctttgtccttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708718|gb|FC059598.1|FC059598EST: GAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCG CTGTGTGCAGATTCAGCACTGGTT
genomic: GAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCGgtacatatcc ... ctttctacagATGTGTGCAGATTCAGCACTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATCAAGGTAGTTCGAAGCATAAGCAAGTACCGTGATGCAGCAATGGTTGAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCGgtacatatccactagattttctgctgaatggaaggttgacgctagttggctttatgccctgctctaatgtttatgaattttcttgctttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT