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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTTGGGGCAAAATTTCCATGGTTGATGCAGAGAAGAGACTTTTAGGACATGCTCTAGAAGACCCCAACAACCAGCACTTTGTCCTGCTATCTGATAGgtgattgggttatcagatttctctaccacttcctacatgcagaattgcacttgatgctgaatcaacaagttttaacttttttcatttttcatttttatttttttgcag

Basic information

species Vitis vinifera
transcript Vv04s0008g02630.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g45110.1 (Oryza sativa), 5'ss of exon 4
TGATTTGGGGCAAAATTTCCATGGTTGATGCAGAGAAGAGACTTTTAGGACATGCTCTAGAAGACCCCAACAACCAGCACTTTGTCCTGCTATCTGATAGgtgattgggttatcagatttctctaccacttcctacatgcagaattgcacttgatgctgaatcaacaagttttaacttttttcatttttcatttttatttttttgcag
|  | ||||| || ||||| ||||||||||||||||||||||| || |   |||| || | |||     | ||||||  ||||||  |||| ||||| ||||  |  |  | | |  | |   || |  ||  |     |    || ||||  ||  ||||   |    ||     || || ||                        
TAGTATGGGGAAAGATTTCAATGGTTGATGCAGAGAAGAGACTATTGGCCAATGCACTGGCAGATGTTGATAACCAGTTCTTTGTGTTGCTTTCTGACAGgt--tctgactctgat-tatggataacgatttttgggc-ctttctttcact--atattgaagttatc--ttcctgtttcttacag-----------------------

upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G138505_T01 (Zea mays), 5'ss of exon 4
TGATTTGGGGCAAAATTTCCATGGTTGATGCAGAGAAGAGACTTTTAGGACATGCTCTAGAAGACCCCAACAACCAGCACTTTGTCCTGCTATCTGATAGgtgattgggttatcagatttctctaccacttcctacatgcagaattgcacttgatgctgaatcaacaagttttaacttttttcatttttcatttttatttttttgcag
|  | ||||| |  ||||| |||||||||||||||||||| || |||||| ||||  | |||||     | || ||    || ||| |||| ||||| ||||   |   | ||           |  |   |     | |  |||| |  ||| |  | | | || ||   ||    ||| |  | |  ||                 
TAGTATGGGGGAGGATTTCAATGGTTGATGCAGAGAAGAGGCTGTTAGGAAATGCATTGGAAGATGTTGATAATCAATTTTTCGTCTTGCTTTCTGACAGgtt-ctaaatgattttgcaggcaaaagagagctctttt-ctcaatt-cttttgctagtaatttaataaacctt----tttcttgtatgacag----------------