Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacctcatccttattcatcataatattagagaagaaactcagagctcctcttatgcttccacttgccatttgtctaaaatttggctttctcgttcctggacatttcgctttggcag

Basic information

species Vitis vinifera
transcript Vv04s0008g02290.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G33630.1 (Glycine max), 5'ss of exon 4
AGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacctcatcctt---attcatcataatattagagaagaaactcagagctcctctt-atgc-ttccact---tgccatttgtctaaaatttggctttctc-gttcctggacat-ttcgctttggcag------------
||| ||||||||||||| ||||||||| ||| || |||||||||||||||||||||| |||||||||||||| ||||| || ||| ||||||| ||||||||| ||| ||| |  |     ||  ||   ||  ||   |       |  ||  ||  ||| |||| ||  | |   ||  |||  | ||| |  || | |  |  | |    |   | |||  |||                 
AGAGTGTGCTATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgatatcaacttcatgcattttattctatggaattcttttaagaaatgacatgattagatataaggtgtgttcaattttatcctttatgtggcag

upper sequence: Vv04s0008g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G12380.1 (Glycine max), 5'ss of exon 4
AGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacctcatccttattcatcataatattagagaagaaactcagagctcctcttatgcttccacttgccatttgtctaaaatttggctttctcgttcctg-gacat--ttcgctttggcag--------
||| ||||| ||||||| ||||||||| ||| || |||||||||||||||||||||| |||||||||||||| ||||| || ||| ||||||| ||||||||| ||| ||| |  |  |   |||    |||| ||     || |    | || |||| ||    ||  | |      | ||   | |||  |||| |       |||||  || | | |   |         
AGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactcc-acagatc----tattgga-----aattttatgttcttcttttgaaatcaacttcatgcattttattctatggaattcttgaagaaatgacatgattagatataagatgtgttcag

upper sequence: Vv04s0008g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G12380.2 (Glycine max), 5'ss of exon 4
AGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacctcatcctt---attcatcataatattagagaagaaactcagagctcctctt-atgc-ttccact---tgccatttgtctaaaatttggctttctcgttcctggacat-ttcgctttggcag------------
||| ||||| ||||||| ||||||||| ||| || |||||||||||||||||||||| |||||||||||||| ||||| || ||| ||||||| ||||||||| ||| ||| |  |     ||  ||   ||  ||   |       |  ||  ||  ||| |||| ||  | |   ||  |||  |  | || |    |   | | |    ||  | |||  |||                 
AGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgaaatcaacttcatgcattttattctatggaattcttgaagaaatgacatgattagatataagatgtgttcagttttatcctttatgtggcag

upper sequence: Vv04s0008g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G20910.1 (Arabidopsis thaliana), 5'ss of exon 4
AGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgta-------atgtacctcatccttattcatcataatattagagaagaaactcagagctcctcttatgcttccacttgccatttgtctaaaatttggctttctcgttcctggacatttcgctttggcag
|||||||   || |||||||||||  | ||| | |  ||||| ||||| || ||||| ||||||||||||||||||||||| ||  ||||||| |||||||||       |   | | ||| ||| |  | | || || ||   |||||  | |    |   || ||  |      || ||                                                
AGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGgtataaaaaaaaaaatcccattctt-tcaagcttactagtaagtaagaacataaagcttatgctcatattgttttatggcag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387031|gb|EC951670.1|EC951670
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|22009632|gb|BQ794666.1|BQ794666
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|110359196|gb|EC920296.1|EC920296
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|351027748|gb|FQ446915.1|FQ446915
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|22009633|gb|BQ794667.1|BQ794667
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|33402318|gb|CF207945.1|CF207945
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|349830496|gb|FQ416794.1|FQ416794
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GGATA-GCACCATTCTT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagG-ATAAGCACAATTCTT
EST: gi|110409640|gb|EC975307.1|EC975307
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|22008390|gb|BQ793424.1|BQ793424
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|110375238|gb|EC940205.1|EC940205
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCCATCTGTCGGCATGAACTGCTCACTGATG
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATG
EST: gi|22008718|gb|BQ793752.1|BQ793752
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|349825321|gb|FQ418053.1|FQ418053
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAGGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGA
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGA
EST: gi|22009328|gb|BQ794362.1|BQ794362
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|22009660|gb|BQ794694.1|BQ794694
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|349823912|gb|FQ415323.1|FQ415323
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAANCACAATTCTTGCCCAATCTG
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTG
EST: gi|110398241|gb|EC964460.1|EC964460
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|352763367|gb|FQ471679.1|FQ471679
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCA
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCA
EST: gi|110428728|gb|EC995207.1|EC995207
EST:     AAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
EST: gi|110429507|gb|EC996001.1|EC996001
EST:     AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTG                         GATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT
genomic: AGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgtaatgtacc ... gctttggcagGATAAGCACAATTCTTGCCCAATCTGTCGGCATGAACTGCTCACTGATGAT