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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGgtaaattttgatcaaaacacttagaaaatctcctgagacctaaccccaaaaatctagtacttctaatacttttaatacttctcag

Basic information

species Vitis vinifera
transcript Vv04s0008g02070.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g25550.1 (Oryza sativa), 5'ss of exon 4
TTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGgtaaattttgatcaaaacacttagaaaatctcctgagacctaaccccaaaaatctagtacttctaatactt----tta-atacttctcag-----------------------------------------------------------------------------
||||| || || || || || ||  |||  |||||||| || || || ||  || | ||||||||||| ||||||||||| || || || |||||||||||||   |   ||    |||| || |   |  |  |  | |||       ||| | |||| |    |   ||    | | |||| | |||                                                                              
TTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATGCCGCACCAGAATACATCATGACTGgta--ctaaaattgtcacacatatagtctacctagctagctagttttgtaaa-cgagtagtggcgaagtttaacataatatacctttcatgtaccctaaagaaataaaaatatatacctttcatgtttcaactaattggctattaatattacttcatgttattgcag

upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G110968_T02 (Zea mays), 5'ss of exon 4
TTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGgtaaat-tttgatcaaaacac-ttagaaaatctcc-tgag---acctaaccccaaaaatctagtact--tctaatacttttaatacttctcag-------------------------------
||||||||||||||||  || || | ||  |||||||| ||||| || |||||| | |||||||| || ||||| ||||| || ||||| |||||||| ||||  |  ||   ||||| |  |||   ||  | | || |   ||  | |    |  ||||| |  |  | |  |     | | | ||  |||                               
TTCGGGCTAGCGAAGGCTGGACCTGGAGAAGACGAGACCCACGTGTCGACCCGAGTCATGGGCACGCAGGGCTACGCCGCACCCGAGTACATCATGACAGgtatgtacttaggcaaaaaatattatggaacatgcatgcgcgcactcagcagtgacgatctactgttaattttttctgcgttaaaattagcagggcatctaacgaccaagagcgacgtgtacag

upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G110968_T01 (Zea mays), 5'ss of exon 4
TTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGgtaaat-tttgatcaaaacac-ttagaaaatctcc-tgag---acctaaccccaaaaatctagtact--tctaatacttttaatacttctcag
||||||||||||||||  || || | ||  |||||||| ||||| || |||||| | |||||||| || ||||| ||||| || ||||| |||||||| ||||  |  ||   ||||| |  |||   ||  | | || |   ||  | |    |  ||||| |  |  | |  |     | | | ||  |||
TTCGGGCTAGCGAAGGCTGGACCTGGAGAAGACGAGACCCACGTGTCGACCCGAGTCATGGGCACGCAGGGCTACGCCGCACCCGAGTACATCATGACAGgtatgtacttaggcaaaaaatattatggaacatgcatgcgcgcactcagcagtgacgatctactgttaattttttctgcgttaaaattagcag

upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G12710.1 (Glycine max), 5'ss of exon 4
TTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGgtaaat----tttgat-caaaacacttagaaaatctcctga--gacctaaccccaaaaatctagtacttctaatacttttaat--acttctcag------
|| |||||||| ||||| || || ||||| || || || |||||| |||| || |||||||| ||||| || ||||| ||||||||||| |||||||| |||| ||    |   || |||||   |||  || | ||  |   ||  |  | |  ||||  ||        |    |  || |  | |||| |       
TTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACACGTAACAACACGCATAATGGGAACACAAGGTTATGCTGCTCCTGAGTACATCATGACAGgtatatgcactaccatacaaaatgtttaccaagtttctagcatgaattggcacataaaaagtaaagggggaagggatactatttcatttcttaatcctaa

upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G33470.1 (Glycine max), 5'ss of exon 4
TTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGgtaaattttgatcaaaacacttagaaaatctcctgagac-ctaaccccaaaaatctagtacttctaatacttttaatacttctcag--------------
|| |||||||| ||||| || || ||||| || || || || ||| |||| || |||||||| ||||| || ||||| ||||||||||| |||||||| ||| | | |       | ||   | || ||   |  ||   |||    | |  ||  | |    |  | |   | ||         |              
TTTGGGCTAGCTAAGGATGGCCCTGAAGGGGAAGACACACATGTAACAACACGCATAATGGGAACACAAGGTTATGCTGCTCCTGAGTACATCATGACAGgttagtatatgcactaccatacaaaatattaaccaagtttctactttctagcatgaattggcacataaaaagtaaagggggaagggatactatttcattt

upper sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S207_2V6.1 (Physcomitrella patens), 5'ss of exon 5
TTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGgta--aattttg---------atcaaaac-acttagaaaatctcctgagacctaaccccaaaaatctagtacttcta-atacttttaatacttctcag--
|||||||||||||| || || || ||||| ||| | |||||||| ||||| ||  | ||||||||  |||||||||| || ||||||||| | |||||||||   || | |          ||||   | |||  ||||||    |||   ||   ||  |  |  |     || ||  ||   | |  | |||  |   
TTCGGGCTAGCGAAAGATGGACCTGAAGGAGACAAAACTCACGTTTCAACACGTGTTATGGGCACCTATGGCTATGCTGCCCCTGAGTATGTGATGACTGgtgtgaactctcccccactctatcatgtctactctgaaaatgctatgacgtcttttccagatcacttttcttttttacgtatgatcataaattcaaatga