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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGTACGGAACGGCAATTATGATGAGGCTCTTGATTTAGAGGCTTTTGTTTGCAAACTTTCAACAATGCACCCAAAgtgagcttttatttcttgtatgctacttgccaactaatatttgttttagctgtcaaccttgagaaatgtaactcactattgccctgttttttcgcttaaag

Basic information

species Vitis vinifera
transcript Vv04s0008g01350.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G22880.1 (Glycine max), 5'ss of exon 3
ATGTGTACGGAACGGCAATTATGATGAGGCTCTTGATTTAGAGGCTTTTGTTTGCAAACTTTCAACAATGCACCCAAAgtgagcttttat--ttcttgtatgctacttgccaactaatatttgttttagctg--tcaaccttgagaaatgtaactcactattgccctgttttttcgcttaaag------------------------
||||||||||||||| ||||||||||| || || ||||| || || |||||| ||||||||||||| ||||| ||||||| || || |||  |||||  |||||  || | || ||||||   ||| |   |  |     ||     || ||  | | ||||    | |||||  | |   |                         
ATGTGTACGGAACGGGAATTATGATGAAGCCCTAGATTTGGAAGCATTTGTTGGCAAACTTTCAACCATGCATCCAAAgtaagtttatatgcttcttccatgctgtttac-aattaatatacttttaaatagaattctttttcttccatttatatta-tattattttatttttatgttgttactaaatgtttttcccgggtgcatag

upper sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G04920.1 (Glycine max), 5'ss of exon 3
ATGTGTACGGAACGGCAATTATGATGAGGCTCTTGATTTAGAGGCTTTTGTTTGCAAACTTTCAACAATGCACCCAAAgtgagcttttat--ttcttgtatgctacttgccaactaatatttgttttagctg------tcaaccttgagaaatgtaac-tcact--attgccctgttttttcgcttaaag--------------------
|||||||||||| || ||||||||||| || || ||||| || || |||||| ||||||||||||| ||||| ||||||| || || |||  |||||  |||||  || | || ||||||   ||| |   |      |   | |  ||   | |||  | | |  |||   ||||| ||     ||||                     
ATGTGTACGGAATGGGAATTATGATGAAGCCCTAGATTTGGAAGCATTTGTTGGCAAACTTTCAACCATGCATCCAAAgtaagtttatatgcttcttccatgctgtttac-aattaatatacctttaaataggattctttttcttccagttttataatattattttatttttctgttcttgttactaaaatgtttttcttgggtgcaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389066|gb|EC953878.1|EC953878
EST:     GCTCTTGATTTAGAGGCTTTTGTTTGCAAACTTTCAACAATGCACCCAAA                         ATTGCCAGTCATTCAAGCACTGGCTGCAGAAGTTAGGCAAACAACCCAATC
genomic: GCTCTTGATTTAGAGGCTTTTGTTTGCAAACTTTCAACAATGCACCCAAAgtgagctttt ... tcgcttaaagATTGCCAGTCATTCAAGCACTGGCTGCAGAAGTTAGGCAAACAACCCAATC